Factsheet for AT1G23900.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59088	Canola	mitochondrion	92.24	92.66
Bra024627.1-P	Field mustard	mitochondrion	91.67	92.09
CDY25807	Canola	mitochondrion	91.55	91.66
CDY47649	Canola	mitochondrion	91.21	91.63
Bra012393.1-P	Field mustard	mitochondrion	91.32	91.53
CDY28466	Canola	mitochondrion	91.21	91.42
GSMUA_Achr10P...	Banana	mitochondrion	30.14	78.34
VIT_01s0026g00310.t01	Wine grape	mitochondrion	77.17	76.99
HORVU5Hr1G019420.1	Barley	cytosol	7.42	76.47
KRH69527	Soybean	mitochondrion	75.8	76.06
KRH74623	Soybean	mitochondrion	75.34	75.78
Os02t0805000-01	Rice	cytosol, plasma membrane	42.12	75.46
HORVU1Hr1G048590.1	Barley	cytosol, mitochondrion	7.31	75.29
HORVU3Hr1G053020.1	Barley	cytosol	7.31	75.29
PGSC0003DMT400010532	Potato	cytosol, mitochondrion	73.29	73.04
KRH45711	Soybean	cytosol, mitochondrion	73.29	72.87
Solyc04g025870.2.1	Tomato	plastid	72.83	72.75
Solyc05g005780.2.1	Tomato	nucleus	72.95	72.7
AT1G60070.2	Thale cress	cytosol, mitochondrion	74.43	72.61
GSMUA_Achr9P18340_001	Banana	mitochondrion	67.81	68.83
HORVU7Hr1G027050.3	Barley	cytosol	68.15	68.7
Os06t0167100-01	Rice	plasma membrane	68.04	68.51
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	67.47	68.48
TraesCS7D01G128900.2	Wheat	cytosol	67.47	67.93
TraesCS7B01G029800.2	Wheat	cytosol	67.35	67.82
KXG19397	Sorghum	cytosol, plastid	67.58	67.73
TraesCS7A01G129800.3	Wheat	peroxisome	67.24	67.7
Zm00001d045195_P002	Maize	cytosol	66.78	67.47
TraesCS6A01G373200.1	Wheat	mitochondrion	67.12	65.92
TraesCS6D01G357400.1	Wheat	golgi	67.35	65.77
TraesCS6B01G410900.2	Wheat	cytosol	66.55	65.07
Zm00001d036305_P003	Maize	mitochondrion	67.12	64.9
Zm00001d051998_P003	Maize	cytosol	65.75	63.93
HORVU3Hr1G040310.1	Barley	cytosol	13.01	63.69
KXG31353	Sorghum	cytosol	65.41	63.6
HORVU7Hr1G050510.16	Barley	cytosol	11.42	60.98
HORVU6Hr1G087920.7	Barley	mitochondrion	67.58	59.02
GSMUA_Achr10P...	Banana	cytosol	20.89	49.86
KRG99303	Soybean	nucleus	8.22	40.0
AT5G22770.1	Thale cress	cytosol	25.34	21.94
AT5G22780.1	Thale cress	cytosol	25.23	21.82
AT1G31730.1	Thale cress	cytosol	20.55	19.19
AT1G48760.2	Thale cress	cytosol	16.1	16.23

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:22.1.2.1	EntrezGene:839001	ProteinID:AAD28247.1	ProteinID:AAF87139.1
ProteinID:AEE30448.1	ProteinID:AEE30449.1	EMBL:AF061286	EMBL:AJ133777	InterPro:AP1_complex_gsu	InterPro:ARM-like
InterPro:ARM-type_fold	ArrayExpress:AT1G23900	EnsemblPlantsGene:AT1G23900	RefSeq:AT1G23900	TAIR:AT1G23900	RefSeq:AT1G23900-TAIR-G
EnsemblPlants:AT1G23900.2	TAIR:AT1G23900.2	Unigene:At.10731	EMBL:BT004307	EMBL:BT005557	InterPro:Clathrin/coatomer_adapt-like_N
InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:GAE_dom	Symbol:GAMMA-ADAPTIN 1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030121	GO:GO:0030131	GO:GO:0030665
GO:GO:0031410	InterPro:IPR008153	InterPro:IPR011989	RefSeq:NP_173802.1	RefSeq:NP_849701.1	PFAM:PF01602
PFAM:PF02883	PIRSF:PIRSF037094	PO:PO:0000293	PFscan:PS50180	PANTHER:PTHR22780	PANTHER:PTHR22780:SF27
UniProt:Q84K16	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348	UniParc:UPI000000C331	SEG:seg

Description

GAMMA-ADRAP-1 complex subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q84K16]

Coordinates

chr1:+:8441079..8447681

Molecular Weight (calculated)

96474.3 Da

IEP (calculated)

5.401

GRAVY (calculated)

-0.054

Length

876 amino acids

Sequence
(BLAST)

001: MNPFSSGTRL RDMIRAIRAC KTAAEERAVV RKECADIRAL INEDDPHDRH RNLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHSNQY VVGLALCALG NICSAEMARD LAPEVERLIQ FRDPNIRKKA ALCSTRIIRK VPDLAENFVN AAASLLKEKH HGVLITGVQL
201: CYELCTINDE ALEYFRTKCT EGLIKTLRDI TNSAYQPEYD VAGITDPFLH IRLLRLLRVL GQGDADASDL MTDILAQVAT KTESNKNAGN AVLYECVETI
301: MAIEDTNSLR VLAINILGRF LSNRDNNIRY VALNMLMKAI TFDDQAVQRH RVTILECVKD PDASIRKRAL ELVTLLVNEN NVTQLTKELI DYLEISDEDF
401: KEDLSAKICF IVEKFSPEKL WYIDQMLKVL CEAGKFVKDD VWHALIVVIS NASELHGYTV RALYKSVLTY SEQETLVRVA VWCIGEYGDL LVNNVGMLGI
501: EDPITVTESD AVDVIEDAIT RHNSDSTTKA MALVALLKLS SRFPSISERI KDIIVKQKGS LLLEMQQRAI EYNSIVDRHK NIRSSLVDRM PVLDEATFNV
601: RRAGSFPASV STMAKPSVSL QNGVEKLPVA PLVDLLDLDS DDIMAAPSPS GTDFLQDLLG VDLGSSSAQY GATQAPKAGT DLLLDILSIG TPSPAQNSTS
701: SIGLLSIADV NNNPSIALDT LSSPAPPHVA TTSSTGMFDL LDGLSPSPSK EATNGPAYAP IVAYESSSLK IEFTFSKTPG NLQTTNVQAT FTNLSPNTFT
801: DFIFQAAVPK FLQLHLDPAS SNTLLASGSG AITQNLRVTN SQQGKKSLVM RMRIGYKLNG KDVLEEGQVS NFPRGL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.