CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045195_P002	Maize	cytosol	95.08	95.85
Zm00001d036305_P003	Maize	mitochondrion	96.68	93.27
Os06t0167100-01	Rice	plasma membrane	91.08	91.49
TraesCS7B01G029800.2	Wheat	cytosol	88.22	88.62
HORVU7Hr1G027050.3	Barley	cytosol	87.87	88.38
TraesCS7D01G128900.2	Wheat	cytosol	87.64	88.05
TraesCS7A01G129800.3	Wheat	peroxisome	87.64	88.05
GSMUA_Achr10P...	Banana	mitochondrion	32.27	83.68
CDX91727	Canola	mitochondrion	10.76	78.33
KXG31353	Sorghum	cytosol	80.66	78.25
GSMUA_Achr9P18340_001	Banana	mitochondrion	75.86	76.83
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	75.4	76.36
VIT_01s0026g00310.t01	Wine grape	mitochondrion	71.51	71.18
KRH69527	Soybean	mitochondrion	69.11	69.19
KRH74623	Soybean	mitochondrion	68.76	69.0
CDY59088	Canola	mitochondrion	67.96	68.12
Bra024627.1-P	Field mustard	mitochondrion	67.96	68.12
CDY28466	Canola	mitochondrion	67.85	67.85
Solyc04g025870.2.1	Tomato	plastid	68.08	67.84
CDY47649	Canola	mitochondrion	67.62	67.78
CDY25807	Canola	mitochondrion	67.85	67.77
AT1G23900.2	Thale cress	mitochondrion	67.73	67.58
Bra012393.1-P	Field mustard	mitochondrion	67.51	67.51
PGSC0003DMT400010532	Potato	cytosol, mitochondrion	67.39	67.01
Solyc05g005780.2.1	Tomato	nucleus	67.28	66.89
AT1G60070.2	Thale cress	cytosol, mitochondrion	67.73	65.92
KRH45711	Soybean	cytosol, mitochondrion	66.25	65.72
CDY24514	Canola	cytosol	14.76	63.86
CDY33619	Canola	mitochondrion	31.58	60.66
GSMUA_Achr10P...	Banana	cytosol	23.68	56.4
Bra031528.1-P	Field mustard	mitochondrion	12.81	51.38
KRG99303	Soybean	nucleus	7.89	38.33
KXG40365	Sorghum	cytosol	25.4	21.26
EES04102	Sorghum	cytosol	19.34	17.44
EES17171	Sorghum	plastid	15.79	14.56
KXG20021	Sorghum	cytosol	11.56	14.43
EER88616	Sorghum	cytosol	8.35	14.31
EES14423	Sorghum	cytosol	3.66	11.68

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:22.1.2.1	UniProt:A0A194YHF3	InterPro:AP1_complex_gsu	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:GAE_dom	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030121	GO:GO:0030131	GO:GO:0031410
InterPro:IPR008153	InterPro:IPR011989	EnsemblPlants:KXG19397	ProteinID:KXG19397	ProteinID:KXG19397.1	PFAM:PF01602
PFAM:PF02883	PIRSF:PIRSF037094	PFscan:PS50180	PANTHER:PTHR22780	PANTHER:PTHR22780:SF27	SMART:SM00809
EnsemblPlantsGene:SORBI_3010G053800	SUPFAM:SSF48371	SUPFAM:SSF49348	UniParc:UPI0007F30553	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:4218531..4228302

Molecular Weight (calculated)

95723.7 Da

IEP (calculated)

6.182

GRAVY (calculated)

-0.038

Length

874 amino acids

Sequence
(BLAST)

001: MDLAINPFSS GTRLRVTILR RDMIRAIRAC KTAAEERAVV RRECAAIRAA ISEGDQDYRH RNMAKLMFIH MLGYPTHFGQ MECLKLIAAA GFPEKRIGYL
101: GLMLLLDERQ EVLMLVTNSL KQDLNHSNQF IVGLALCALG NICSAEMARD LAPEVERLLQ NRDPNTKKKA ALCSIRIVRK VPDLAENFMS AAASLLKEKH
201: HGVLISAVQL CMELCKASYE TLEYLRKNCL EGLVRILRDV SNSSYAPEYD IGGITDPFLH IRVLKLMRIL GQGDADCSEY INDILAQVST KTESNKNAGN
301: AILYECVETI MGIEATSGLR VLAINILGRF LSNRDNNIRY VALNMLMKAI SVDTQAVQRH RATILECVKD ADVSIRKRAL ELVYLLVNDT NVKPLTKELV
401: DYLEVSDQDF KEDLTAKICS IVEKFSMDKL WYLDQMFRVL SLAGNYIKDD VWHALIVLMS NASELQGYSV RSLYKALQAS GEQESLVRVA VWCIGEYGEM
501: LVNNLSMLDM EEPITVTESD AVDAVEVALQ RYSADVTTRA MCLVSLLKLS SRFPPTSERI KDIVAQNKGN TVLELQQRSI EFSSIIQRHQ SIKSSLLERM
601: PVLDEANYLV KRAASTQAAV SSVNSAPAAT SGGPLKLPNG VAKPPAAPLA DLLDLSSDDA PVTTSAPTTA PNDFLQDLLG IGLTDSSPLG GAPSTSTDIL
701: MDLLSIGSSP VQNGPATSNF SLPGIETKPI PVTPQVVDLL DGLSSSTSLP DENAAYPTIT AFQSATLKIT FSFKKQPGKP QETTINASIT NLATTTFTDF
801: VFQAAVPKFI QLRLDPASSS TLPASGNGSV TQSLSVTNNQ HGQKPLAMRI RMSYKVNGED RLEQGQISNF PAGL

Best Arabidopsis Sequence Match ( AT1G60070.1 )
(BLAST)

001: MNPFSSGTRL SDMIRAIRAS KTAAEERAVV RKECAAIRAS INENDQDYRH RDLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHTNQY IVGLALCALG NICSAEMARD LAPEVERLLQ FRDPNIRKKA ALCAIRIIRK VPDLSENFIN PGAALLKEKH HGVLITGVHL
201: CTEICKVSSE ALEYFRKKCT EGLVKTLRDI ANSPYSPEYD VAGITDPFLH IRLLKLLRVL GQGDADASDC MNDILAQVAS KTESNKNAGN AILYECVQTI
301: MSIEENGGLR VLAINILGKF LSNRDNNIRY VALNMLMRSL TVDSQAVQRH RATILECVKD SDASIQKRAL ELIYLLVNEN NVKPLAKELI EYLEVSEQDF
401: KGDLTAKICS IVEKFAPEKI WYIDQMLKVL SEAGTYVKED VWHALIVVIT NAPDLHGYTV RALYRALHTS FEQETLVRVA IWCIGEYADL LVNNAGMLDL
501: EDPITVTESD AVDVVENAIK HHLSDVTTKA MALIALLKIS SRFPSCSERV KSIIGQNKGS FVLELQQRSL EFSSVIQKHQ NIRSSLVERM PVLDEATFSG
601: RRAGSLPASV STSGKSPLGI PNGVAKAAAP LVDLLDLGSD DTPAPTSSSN NFLQDLLGVD LSQPSAQPGA MQPSQAGADI LMDLLSIGTP APVQNGSANG
701: DLLSIQDNNA PIAPSLTSPT APSSMMDLLD GFGPTPPKSE DKSAAYPSIV AFESSSLKIE FNFTKQSENP QTTDIVANFI NLTPNVYTEF LFQAAVPKFL
801: QLHLDPASSN SLPANGNIKQ TMRVTNSQKG KKPIVMRMRV GYKINGKDVL EEGQINNFPR GL

Arabidopsis Description

Adaptor protein complex AP-1, gamma subunit [Source:UniProtKB/TrEMBL;Acc:F4IEP9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.