Factsheet for Zm00001d008959_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 3
plastid 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010979_P001	Maize	nucleus	30.94	92.47
Zm00001d043645_P001	Maize	cytosol	22.66	58.88
Zm00001d007683_P001	Maize	extracellular	17.27	58.54
Zm00001d049633_P002	Maize	mitochondrion	37.05	47.91
EES11323	Sorghum	cytosol	43.53	29.16
Zm00001d002538_P001	Maize	cytosol	42.81	28.67
Os04t0584800-01	Rice	cytosol	37.05	24.64
TraesCS2D01G456200.1	Wheat	cytosol	35.25	23.33
TraesCS2B01G477900.1	Wheat	cytosol	35.25	23.28
TraesCS2A01G455900.1	Wheat	cytosol	34.89	23.1
PGSC0003DMT400048040	Potato	cytosol	29.14	20.0
GSMUA_Achr4P29710_001	Banana	cytosol	28.78	19.95
AT5G65960.1	Thale cress	cytosol	28.06	19.85
Solyc03g032050.2.1	Tomato	cytosol	28.78	19.75
Bra037194.1-P	Field mustard	nucleus	27.7	19.69
CDX81426	Canola	nucleus	26.62	19.47
CDY18578	Canola	cytosol	26.98	19.28
KRH07810	Soybean	cytosol	26.98	19.04
KRH39402	Soybean	cytosol	26.62	18.73
VIT_07s0031g02260.t01	Wine grape	cytosol	25.18	17.37
GSMUA_Achr2P11020_001	Banana	cytosol, golgi, peroxisome, plastid	16.91	15.31

Protein Annotations

Gene3D:3.40.50.620	MapMan:35.1	UniProt:A0A1D6FGW0	ProteinID:AQK91079.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004812	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR014729	PFAM:PF00133	ScanProsite:PS00178	PANTHER:PTHR42765	PANTHER:PTHR42765:SF1	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF52374	UniParc:UPI000844BF09	EnsemblPlantsGene:Zm00001d008959	EnsemblPlants:Zm00001d008959_P001	EnsemblPlants:Zm00001d008959_T001	InterPro:aa-tRNA-synth_I_CS
InterPro:aa-tRNA-synth_Ia	SEG:seg	:	:	:	:

Description

GTP binding

Coordinates

chr8:+:27401361..27418767

Molecular Weight (calculated)

30765.2 Da

IEP (calculated)

6.600

GRAVY (calculated)

-0.525

Length

278 amino acids

Sequence
(BLAST)

001: MEAASCCRVF STQWCRFPLR RLSAPPWPQP FCTESNGGLV TPSASKWMSR GPVMAAKKAA EGGKQEDGKY KHIVDLTETT FGLRANSVQR EPELQKLWDD
101: NQVLKSVSER NTGTAFVLHD GPPYANGDLH MGHALNKILR TTVGVDIQMF EILLCVGSKA DLVPVRSVDG DSQGLERLFG ALSAHMWPGM ILKSGNRITA
201: PFLVEKQESK DDESNYDLEY DVLSHGFDDH WKFVGETSTS RRFERSNEAD GAQKHTHQVV KASIDSSTSN PLPSNTPT

Best Arabidopsis Sequence Match ( AT5G65960.1 )
(BLAST)

001: MESRPGVLVV GSSGVGKRTL LSRLLSVEFE DSSESSSQTE VHGWTINTKY YTADVSVCIS HICDEYSLPN LPNSHPLVAL VMVFDLSELS TLVALQDWVS
101: HTDINSFDIL LCIGNKVDRV PHHLAHDEYR RRLLKASDPS RDLYSDIDDF GISETEGSSL LGSEDASLDI RGACLEWCSE NNIEFIEACA SNPDFDKCLS
201: VDGDSQGVER LFGALSAHMW PGMILKSGDR INEPVLPQGE ELSEEESEYE LEYEVLSAGS GDPWDNIEER WVSASETHSH ADAGGSTSQE NLHVENSMVK
301: PNKVDEELLP SGSRLELQND TDRAIVTDEK PLGTENEKCY EFEDVEQLMS EIGNIRDNLR LMPDFQRREI AANLAMKMAS MFGGDTDDEE EPE

Arabidopsis Description

GTP binding protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.