Factsheet for PGSC0003DMT400048040

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g032050.2.1	Tomato	cytosol	95.31	95.31
Zm00001d007683_P001	Maize	extracellular	13.09	64.63
VIT_07s0031g02260.t01	Wine grape	cytosol	62.96	63.28
Zm00001d043645_P001	Maize	cytosol	16.05	60.75
AT5G65960.1	Thale cress	cytosol	55.8	57.51
CDX81426	Canola	nucleus	51.6	55.0
KRH39402	Soybean	cytosol	52.84	54.18
CDY18578	Canola	cytosol	51.85	53.98
KRH07810	Soybean	cytosol	52.35	53.81
Bra037194.1-P	Field mustard	nucleus	51.85	53.71
GSMUA_Achr4P29710_001	Banana	cytosol	52.84	53.37
EES11323	Sorghum	cytosol	46.67	45.54
Os04t0584800-01	Rice	cytosol	46.91	45.45
TraesCS2D01G456200.1	Wheat	cytosol	45.93	44.29
Zm00001d002538_P001	Maize	cytosol	45.19	44.1
TraesCS2A01G455900.1	Wheat	cytosol	45.43	43.81
TraesCS2B01G477900.1	Wheat	cytosol	44.94	43.23
GSMUA_Achr2P11020_001	Banana	cytosol, golgi, peroxisome, plastid	28.89	38.11
Zm00001d010979_P001	Maize	nucleus	8.15	35.48
Zm00001d008959_P001	Maize	plastid	20.0	29.14
Zm00001d049633_P002	Maize	mitochondrion	13.83	26.05

Protein Annotations

EnsemblPlants:PGSC0003DMT400048040	EnsemblPlantsGene:PGSC0003DMG400018667	EntrezGene:102600442	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:Alpha/Gamma-adaptin-bd_p34	InterPro:P-loop_NTPase
InterPro:Small_GTPase	PANTHER:PTHR14659	PFAM:PF00071	PFAM:PF10199	PGSC:PGSC0003DMG400018667	RefSeq:XP_006343321.1
SEG:seg	SUPFAM:SSF52540	UniParc:UPI000295A62A	UniProt:M1BLV4	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018667]

Coordinates

chr3:+:3048502..3057254

Molecular Weight (calculated)

44517.4 Da

IEP (calculated)

4.001

GRAVY (calculated)

-0.445

Length

405 amino acids

Sequence
(BLAST)

001: MDHQQEQDSP TFNSKSLEKK PGILILGSPN VGKRALIARL LSVDSEDSFE SSSNILSYPW TINTKYYNAD VSVWMAHLHE DFSIGALPAY DQLVALVMVF
101: DVTDLSSFVT LKDFVSRTDI LKFEILLCIG NKVDLLPGHS AHVEYRRRLL KSADSSGSPY TEMDSGISET EGSSLLGDDD DSFDTKRSYL EWCLEHSIEY
201: VEACASNAEF DKCLSVDGDS QGAERLFGAL SAYMWPGMIL KSGDKITEPS LPEHQELSDE ESDYELEYEI LSAGSADPWD DTDIGWVSAD APVATTGTEG
301: SVPNGKSEIG LIRGEMQPSS STSQLEGESD RKELPRADAA DGDSEDDKGT TYDFENLEQL MSEIGNVRDS LRLMPDFQRR EMAANLAMKM AAMFGDSSGD
401: EGGLE

Best Arabidopsis Sequence Match ( AT5G65960.1 )
(BLAST)

001: MESRPGVLVV GSSGVGKRTL LSRLLSVEFE DSSESSSQTE VHGWTINTKY YTADVSVCIS HICDEYSLPN LPNSHPLVAL VMVFDLSELS TLVALQDWVS
101: HTDINSFDIL LCIGNKVDRV PHHLAHDEYR RRLLKASDPS RDLYSDIDDF GISETEGSSL LGSEDASLDI RGACLEWCSE NNIEFIEACA SNPDFDKCLS
201: VDGDSQGVER LFGALSAHMW PGMILKSGDR INEPVLPQGE ELSEEESEYE LEYEVLSAGS GDPWDNIEER WVSASETHSH ADAGGSTSQE NLHVENSMVK
301: PNKVDEELLP SGSRLELQND TDRAIVTDEK PLGTENEKCY EFEDVEQLMS EIGNIRDNLR LMPDFQRREI AANLAMKMAS MFGGDTDDEE EPE

Arabidopsis Description

GTP binding protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.