Factsheet for VIT_07s0031g02260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007683_P001	Maize	extracellular	13.9	68.29
PGSC0003DMT400048040	Potato	cytosol	63.28	62.96
Solyc03g032050.2.1	Tomato	cytosol	62.78	62.47
AT5G65960.1	Thale cress	cytosol	58.06	59.54
KRH07810	Soybean	cytosol	57.07	58.38
KRH39402	Soybean	cytosol	57.07	58.23
Zm00001d043645_P001	Maize	cytosol	15.38	57.94
CDX81426	Canola	nucleus	54.09	57.37
CDY18578	Canola	cytosol	54.84	56.81
Bra037194.1-P	Field mustard	nucleus	54.34	56.01
GSMUA_Achr4P29710_001	Banana	cytosol	55.09	55.36
Os04t0584800-01	Rice	cytosol	52.11	50.24
Zm00001d002538_P001	Maize	cytosol	51.36	49.88
EES11323	Sorghum	cytosol	51.36	49.88
TraesCS2D01G456200.1	Wheat	cytosol	51.61	49.52
TraesCS2A01G455900.1	Wheat	cytosol	51.36	49.29
TraesCS2B01G477900.1	Wheat	cytosol	50.87	48.69
GSMUA_Achr2P11020_001	Banana	cytosol, golgi, peroxisome, plastid	31.27	41.04
Zm00001d010979_P001	Maize	nucleus	6.7	29.03
Zm00001d008959_P001	Maize	plastid	17.37	25.18
Zm00001d049633_P002	Maize	mitochondrion	12.9	24.19

Protein Annotations

EntrezGene:100266179	wikigene:100266179	Gene3D:3.40.50.300	MapMan:35.2	InterPro:Alpha/Gamma-adaptin-bd_p34	ProteinID:CBI21576
ProteinID:CBI21576.3	UniProt:D7SWC7	EMBL:FN595233	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EntrezGene:LOC100266179	wikigene:LOC100266179
InterPro:P-loop_NTPase	PFAM:PF00071	PFAM:PF10199	PANTHER:PTHR14659	SUPFAM:SSF52540	InterPro:Small_GTPase
TIGR:TC67805	UniParc:UPI00015C9455	ArrayExpress:VIT_07s0031g02260	EnsemblPlantsGene:VIT_07s0031g02260	EnsemblPlants:VIT_07s0031g02260.t01	unigene:Vvi.6383
RefSeq:XP_002276437	RefSeq:XP_002276437.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:18385399..18388267

Molecular Weight (calculated)

44741.8 Da

IEP (calculated)

4.011

GRAVY (calculated)

-0.445

Length

403 amino acids

Sequence
(BLAST)

001: MDAKSVEKTP GILIVGSSSV GKRTLLSRLL SVDFEDGADS SSEILVHGWT INTKYYTADV SVWMAHLHEG FSIGNLPMLD QLAAVVMVFD MNDLSSFVAL
101: QDWVSHTDIQ NFDILLCVGN KVDLVPGHSA HVEYRRRLQR LGDLSAEPYL EFSEYGISET EGSSLLGDEE SPWEISRSCL EWCSERNIEY IEACASNADF
201: DKCLSVNGDS QGVDRILGAL SAHMWPGMTL KSGDKIMEPS LPENQELSEE ESDYEIEYEI LSAGSAEPWD DTDEVWVSAS GPTASTSTSR SLTQNVEIEE
301: HDQEKKNRGD ARELQVSTST APSQEEINGE MVPKVNETDE AVEVDEGKHL KYEDLEQLMS EIGNMRDSLR LMPDFQRREM AANLAMKMAT MFGDGSDEEG
401: FDG

Best Arabidopsis Sequence Match ( AT5G65960.1 )
(BLAST)

001: MESRPGVLVV GSSGVGKRTL LSRLLSVEFE DSSESSSQTE VHGWTINTKY YTADVSVCIS HICDEYSLPN LPNSHPLVAL VMVFDLSELS TLVALQDWVS
101: HTDINSFDIL LCIGNKVDRV PHHLAHDEYR RRLLKASDPS RDLYSDIDDF GISETEGSSL LGSEDASLDI RGACLEWCSE NNIEFIEACA SNPDFDKCLS
201: VDGDSQGVER LFGALSAHMW PGMILKSGDR INEPVLPQGE ELSEEESEYE LEYEVLSAGS GDPWDNIEER WVSASETHSH ADAGGSTSQE NLHVENSMVK
301: PNKVDEELLP SGSRLELQND TDRAIVTDEK PLGTENEKCY EFEDVEQLMS EIGNIRDNLR LMPDFQRREI AANLAMKMAS MFGGDTDDEE EPE

Arabidopsis Description

GTP binding protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.