CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18578	Canola	cytosol	90.79	88.69
AT5G65960.1	Thale cress	cytosol	74.74	72.26
Zm00001d007683_P001	Maize	extracellular	13.16	60.98
Zm00001d043645_P001	Maize	cytosol	16.32	57.94
KRH39402	Soybean	cytosol	57.37	55.19
KRH07810	Soybean	cytosol	56.84	54.82
VIT_07s0031g02260.t01	Wine grape	cytosol	57.37	54.09
PGSC0003DMT400048040	Potato	cytosol	55.0	51.6
Solyc03g032050.2.1	Tomato	cytosol	54.74	51.36
GSMUA_Achr4P29710_001	Banana	cytosol	51.05	48.38
EES11323	Sorghum	cytosol	49.74	45.54
Os04t0584800-01	Rice	cytosol	49.21	44.74
Zm00001d002538_P001	Maize	cytosol	47.63	43.61
TraesCS2A01G455900.1	Wheat	cytosol	47.37	42.86
TraesCS2B01G477900.1	Wheat	cytosol	46.84	42.28
TraesCS2D01G456200.1	Wheat	cytosol	46.32	41.9
GSMUA_Achr2P11020_001	Banana	cytosol, golgi, peroxisome, plastid	29.21	36.16
Zm00001d010979_P001	Maize	nucleus	8.42	34.41
Zm00001d049633_P002	Maize	mitochondrion	16.32	28.84
Zm00001d008959_P001	Maize	plastid	19.47	26.62

Protein Annotations

EnsemblPlants:CDX81426	EnsemblPlantsGene:GSBRNA2T00135008001	Gene3D:3.40.50.300	GO:A0A078CWA6	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:Alpha/Gamma-adaptin-bd_p34
InterPro:P-loop_NTPase	InterPro:Small_GTPase	PANTHER:PTHR14659	PFAM:PF00071	PFAM:PF10199	ProteinID:CDX81426
ProteinID:CDX81426.1	SEG:seg	SUPFAM:SSF52540	UniParc:UPI0004EE0F66	MapMan:35.2	:

Description

BnaC09g08370D

Coordinates

chrLK031824:-:1665160..1666955

Molecular Weight (calculated)

41920.2 Da

IEP (calculated)

4.008

GRAVY (calculated)

-0.466

Length

380 amino acids

Sequence
(BLAST)

001: MEEETSMEEG RRPGVLVVGS SGVGKRTILS RLISVDFEDS SSQTEVHDWT INTKYYSADV SVWISHICDD HSLPQSHPLV ALVMVFDLNE LSTLVALQDW
101: ASHADISSFD ILLCIGNKVD LVPHHPAHAE YRRRLSKAYS DIDDEFGISQ SEGSSLLGSD DTSSLDIRGT CLDWCRDNNI EFIEACASNP DFDKCLSVDG
201: DSQGVDRLFG ALSAHMWPGM ILKSGDKINE PVLPPHGEEL SEEESEYELE YEVLSSGSAD PWENIDERWV SADAGGSTSR EVEANPKKVV DDVVELGSSG
301: TQGETVVTTT DEKPLRGTED NKVYELEDVE QLMSEIGNIR DNLRLMPDFQ RREIAANLAM KMASMFGGGG DDSDNEEESE

Best Arabidopsis Sequence Match ( AT5G65960.1 )
(BLAST)

001: MESRPGVLVV GSSGVGKRTL LSRLLSVEFE DSSESSSQTE VHGWTINTKY YTADVSVCIS HICDEYSLPN LPNSHPLVAL VMVFDLSELS TLVALQDWVS
101: HTDINSFDIL LCIGNKVDRV PHHLAHDEYR RRLLKASDPS RDLYSDIDDF GISETEGSSL LGSEDASLDI RGACLEWCSE NNIEFIEACA SNPDFDKCLS
201: VDGDSQGVER LFGALSAHMW PGMILKSGDR INEPVLPQGE ELSEEESEYE LEYEVLSAGS GDPWDNIEER WVSASETHSH ADAGGSTSQE NLHVENSMVK
301: PNKVDEELLP SGSRLELQND TDRAIVTDEK PLGTENEKCY EFEDVEQLMS EIGNIRDNLR LMPDFQRREI AANLAMKMAS MFGGDTDDEE EPE

Arabidopsis Description

GTP binding protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.