Skip to main content
crop-pal logo
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • mitochondrion 2
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400001773 Potato nucleus 93.27 92.03
Solyc12g006000.1.1 Tomato cytosol 59.89 61.13
VIT_12s0059g01330.t01 Wine grape cytosol 45.09 56.68
CDY18283 Canola cytosol, nucleus, peroxisome 35.4 54.79
CDY53396 Canola cytosol 41.18 51.43
CDY15531 Canola cytosol, golgi, nucleus 41.05 50.0
Bra015381.1-P Field mustard cytosol 42.53 49.61
AT1G05020.1 Thale cress cytosol 43.47 49.46
Bra030600.1-P Field mustard cytosol, golgi, nucleus 39.43 45.43
CDX86594 Canola cytosol, golgi, nucleus 39.57 45.23
KRH17907 Soybean cytosol 39.03 39.73
GSMUA_Achr2P18700_001 Banana cytosol 25.71 38.12
Solyc12g017440.1.1 Tomato cytosol 14.27 35.45
GSMUA_Achr7P02300_001 Banana plastid 23.69 34.85
Solyc01g104870.2.1 Tomato cytosol, mitochondrion 23.28 29.78
Solyc08g059660.1.1 Tomato cytosol 25.17 29.4
Solyc06g011450.1.1 Tomato cytosol 23.01 27.85
Solyc07g008060.1.1 Tomato cytosol 23.01 27.85
Solyc01g005170.1.1 Tomato cytosol, mitochondrion, plastid 14.4 25.85
Solyc01g005070.2.1 Tomato mitochondrion 12.65 23.62
Solyc07g007820.2.1 Tomato cytosol 17.63 23.27
Solyc02g043810.2.1 Tomato cytosol 17.9 23.01
Solyc04g008350.1.1 Tomato mitochondrion 12.11 22.9
Solyc04g007860.2.1 Tomato cytosol, plastid 17.09 22.56
Solyc11g044860.1.1 Tomato cytosol 14.8 22.0
Solyc12g010530.1.1 Tomato cytosol 16.42 20.54
Solyc12g017430.1.1 Tomato nucleus 3.36 11.79
Protein Annotations
Gene3D:1.20.58.150Gene3D:1.25.40.90MapMan:22.1.6.1InterPro:ANTH_domInterPro:Clathrin_AP_dom2ncoils:Coil
InterPro:ENTHInterPro:ENTH_VHSGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005543
GO:GO:0005545GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150
GO:GO:0008289GO:GO:0009987GO:GO:0016043GO:GO:0030136GO:GO:0030276GO:GO:0048268
InterPro:IPR008942InterPro:IPR013809InterPro:IPR014712UniProt:K4CF41PFAM:PF07651PFscan:PS50942
PANTHER:PTHR22951PANTHER:PTHR22951:SF26SMART:SM00273SUPFAM:SSF48464SUPFAM:SSF89009EnsemblPlantsGene:Solyc07g049380.1
EnsemblPlants:Solyc07g049380.1.1UniParc:UPI000276B245SEG:seg:::
Description
No Description!
Coordinates
chr7:-:59650285..59652516
Molecular Weight (calculated)
82651.6 Da
IEP (calculated)
5.509
GRAVY (calculated)
-0.529
Length
743 amino acids
Sequence
(BLAST)
001: MPSKLKKAIA AVKDQTSISL AKVSTNTSST LEVAVLKATT HDDGPVDERY IHEVVQLVSS NKAYAAACAR AIGKRIGRTR DWIVALKSLI LVLRIFQDGD
101: PYFPREVLHA MKRGAKILNL SNFRDDSNSS PWDFTAFIRT FALYLDERLD CFLTGKLQRR CNYNERENSN YLRSCSDSSR SRSRSRTNEA IREMKPAMLL
201: DKISYWQRLL ERAIATRPTG AAQTNCLVQG ALYAVVQESF DLYRDISDGL TLVLDSFFHL PYQTCVNAFQ TCVKSTKQFE EINSFYSLCK SIGVGRTSEY
301: PSVQIITDEL IESLQEFLKD KSSFPAKSSG DVLLQRPGSM KSSRSRFDSY GGQSEFSEPY SDRSPTMSGN GSPCSSLEDL IRATVTGKSP SISIDLEAYS
401: DIRFKKQFID DICDTGSARS LPVSMIDLVS LSEDNGNIDN EYEQVQDQKQ QPVVGKAKEP NFKEAKPKQE QIKEKRKSTL SSSSSKGWEA VLNEALTPSS
501: TSINAFQEPK EVLRNETNVS PVKASSSNAW DLALFEATPL TNSVQPMPNT VANNIHSYDT STLASTLPSF NALQENQELE QVSRNGANSG WDMVLFETSP
601: QTTAAQPMPS TPNNFNSSYL DELYNQNSST LVPISGLKPN INTNNYNQIP VTESANHYNP FLQDTSTEQP ATPSTPLPTF LATPTFIGQN SSSAEQNDMS
701: FDPFGTFPSS DQMLNGGVNQ KDFLDEQKLW LQNQNKIIAK HRS
Best Arabidopsis Sequence Match ( AT1G05020.1 )
(BLAST)
001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS
Arabidopsis Description
AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.