Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc01g107610.2.1 | |
Solyc06g074650.2.1 | |
Solyc11g066760.1.1 | |
Solyc11g066770.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400001773 | Potato | nucleus | 93.27 | 92.03 |
Solyc12g006000.1.1 | Tomato | cytosol | 59.89 | 61.13 |
VIT_12s0059g01330.t01 | Wine grape | cytosol | 45.09 | 56.68 |
CDY18283 | Canola | cytosol, nucleus, peroxisome | 35.4 | 54.79 |
CDY53396 | Canola | cytosol | 41.18 | 51.43 |
CDY15531 | Canola | cytosol, golgi, nucleus | 41.05 | 50.0 |
Bra015381.1-P | Field mustard | cytosol | 42.53 | 49.61 |
AT1G05020.1 | Thale cress | cytosol | 43.47 | 49.46 |
Bra030600.1-P | Field mustard | cytosol, golgi, nucleus | 39.43 | 45.43 |
CDX86594 | Canola | cytosol, golgi, nucleus | 39.57 | 45.23 |
KRH17907 | Soybean | cytosol | 39.03 | 39.73 |
GSMUA_Achr2P18700_001 | Banana | cytosol | 25.71 | 38.12 |
Solyc12g017440.1.1 | Tomato | cytosol | 14.27 | 35.45 |
GSMUA_Achr7P02300_001 | Banana | plastid | 23.69 | 34.85 |
Solyc01g104870.2.1 | Tomato | cytosol, mitochondrion | 23.28 | 29.78 |
Solyc08g059660.1.1 | Tomato | cytosol | 25.17 | 29.4 |
Solyc06g011450.1.1 | Tomato | cytosol | 23.01 | 27.85 |
Solyc07g008060.1.1 | Tomato | cytosol | 23.01 | 27.85 |
Solyc01g005170.1.1 | Tomato | cytosol, mitochondrion, plastid | 14.4 | 25.85 |
Solyc01g005070.2.1 | Tomato | mitochondrion | 12.65 | 23.62 |
Solyc07g007820.2.1 | Tomato | cytosol | 17.63 | 23.27 |
Solyc02g043810.2.1 | Tomato | cytosol | 17.9 | 23.01 |
Solyc04g008350.1.1 | Tomato | mitochondrion | 12.11 | 22.9 |
Solyc04g007860.2.1 | Tomato | cytosol, plastid | 17.09 | 22.56 |
Solyc11g044860.1.1 | Tomato | cytosol | 14.8 | 22.0 |
Solyc12g010530.1.1 | Tomato | cytosol | 16.42 | 20.54 |
Solyc12g017430.1.1 | Tomato | nucleus | 3.36 | 11.79 |
Protein Annotations
Gene3D:1.20.58.150 | Gene3D:1.25.40.90 | MapMan:22.1.6.1 | InterPro:ANTH_dom | InterPro:Clathrin_AP_dom2 | ncoils:Coil |
InterPro:ENTH | InterPro:ENTH_VHS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005543 |
GO:GO:0005545 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
GO:GO:0008289 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030136 | GO:GO:0030276 | GO:GO:0048268 |
InterPro:IPR008942 | InterPro:IPR013809 | InterPro:IPR014712 | UniProt:K4CF41 | PFAM:PF07651 | PFscan:PS50942 |
PANTHER:PTHR22951 | PANTHER:PTHR22951:SF26 | SMART:SM00273 | SUPFAM:SSF48464 | SUPFAM:SSF89009 | EnsemblPlantsGene:Solyc07g049380.1 |
EnsemblPlants:Solyc07g049380.1.1 | UniParc:UPI000276B245 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7:-:59650285..59652516
Molecular Weight (calculated)
82651.6 Da
IEP (calculated)
5.509
GRAVY (calculated)
-0.529
Length
743 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSKLKKAIA AVKDQTSISL AKVSTNTSST LEVAVLKATT HDDGPVDERY IHEVVQLVSS NKAYAAACAR AIGKRIGRTR DWIVALKSLI LVLRIFQDGD
101: PYFPREVLHA MKRGAKILNL SNFRDDSNSS PWDFTAFIRT FALYLDERLD CFLTGKLQRR CNYNERENSN YLRSCSDSSR SRSRSRTNEA IREMKPAMLL
201: DKISYWQRLL ERAIATRPTG AAQTNCLVQG ALYAVVQESF DLYRDISDGL TLVLDSFFHL PYQTCVNAFQ TCVKSTKQFE EINSFYSLCK SIGVGRTSEY
301: PSVQIITDEL IESLQEFLKD KSSFPAKSSG DVLLQRPGSM KSSRSRFDSY GGQSEFSEPY SDRSPTMSGN GSPCSSLEDL IRATVTGKSP SISIDLEAYS
401: DIRFKKQFID DICDTGSARS LPVSMIDLVS LSEDNGNIDN EYEQVQDQKQ QPVVGKAKEP NFKEAKPKQE QIKEKRKSTL SSSSSKGWEA VLNEALTPSS
501: TSINAFQEPK EVLRNETNVS PVKASSSNAW DLALFEATPL TNSVQPMPNT VANNIHSYDT STLASTLPSF NALQENQELE QVSRNGANSG WDMVLFETSP
601: QTTAAQPMPS TPNNFNSSYL DELYNQNSST LVPISGLKPN INTNNYNQIP VTESANHYNP FLQDTSTEQP ATPSTPLPTF LATPTFIGQN SSSAEQNDMS
701: FDPFGTFPSS DQMLNGGVNQ KDFLDEQKLW LQNQNKIIAK HRS
101: PYFPREVLHA MKRGAKILNL SNFRDDSNSS PWDFTAFIRT FALYLDERLD CFLTGKLQRR CNYNERENSN YLRSCSDSSR SRSRSRTNEA IREMKPAMLL
201: DKISYWQRLL ERAIATRPTG AAQTNCLVQG ALYAVVQESF DLYRDISDGL TLVLDSFFHL PYQTCVNAFQ TCVKSTKQFE EINSFYSLCK SIGVGRTSEY
301: PSVQIITDEL IESLQEFLKD KSSFPAKSSG DVLLQRPGSM KSSRSRFDSY GGQSEFSEPY SDRSPTMSGN GSPCSSLEDL IRATVTGKSP SISIDLEAYS
401: DIRFKKQFID DICDTGSARS LPVSMIDLVS LSEDNGNIDN EYEQVQDQKQ QPVVGKAKEP NFKEAKPKQE QIKEKRKSTL SSSSSKGWEA VLNEALTPSS
501: TSINAFQEPK EVLRNETNVS PVKASSSNAW DLALFEATPL TNSVQPMPNT VANNIHSYDT STLASTLPSF NALQENQELE QVSRNGANSG WDMVLFETSP
601: QTTAAQPMPS TPNNFNSSYL DELYNQNSST LVPISGLKPN INTNNYNQIP VTESANHYNP FLQDTSTEQP ATPSTPLPTF LATPTFIGQN SSSAEQNDMS
701: FDPFGTFPSS DQMLNGGVNQ KDFLDEQKLW LQNQNKIIAK HRS
001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS
Arabidopsis Description
AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.