Factsheet for Solyc01g107610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 4

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066221	Potato	nucleus	98.28	98.28
VIT_03s0180g00180.t01	Wine grape	nucleus	70.69	69.1
KRG91023	Soybean	nucleus	64.94	66.47
KRH35739	Soybean	nucleus	64.37	65.88
GSMUA_Achr3P13080_001	Banana	nucleus	60.92	61.99
GSMUA_Achr1P26130_001	Banana	nucleus	61.49	58.79
Zm00001d047310_P001	Maize	nucleus	58.62	57.63
EER92101	Sorghum	nucleus	57.47	56.5
Os09t0104300-01	Rice	nucleus	56.32	56.0
CDX71211	Canola	nucleus	59.77	53.89
CDY48221	Canola	nucleus	60.34	53.85
Bra040613.1-P	Field mustard	nucleus	60.34	53.85
EES15636	Sorghum	nucleus	54.6	53.07
Zm00001d029576_P002	Maize	mitochondrion, nucleus	56.9	51.83
AT2G15270.1	Thale cress	nucleus	56.9	51.03
TraesCS7B01G357000.1	Wheat	nucleus, plastid	57.47	51.02
TraesCS7D01G444900.1	Wheat	nucleus	56.9	50.51
TraesCS7A01G456000.1	Wheat	nucleus	56.32	50.0
TraesCS5B01G340800.1	Wheat	nucleus	53.45	47.21
TraesCS5D01G346800.1	Wheat	nucleus	52.87	46.46
TraesCS5A01G341200.1	Wheat	nucleus	51.72	45.69
HORVU5Hr1G085580.2	Barley	nucleus	53.45	39.41
HORVU7Hr1G105220.1	Barley	nucleus	58.05	33.78

Protein Annotations

MapMan:35.2	ncoils:Coil	InterPro:DUF1168	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003725	GO:GO:0004860	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006464	GO:GO:0006469	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	GO:GO:0030234	UniProt:K4B2X7
PFAM:PF06658	PANTHER:PTHR13507	EnsemblPlantsGene:Solyc01g107610.2	EnsemblPlants:Solyc01g107610.2.1	UniParc:UPI0002767E62	SEG:seg

Description

No Description!

Coordinates

chr1:+:95106186..95109273

Molecular Weight (calculated)

19453.6 Da

IEP (calculated)

10.147

GRAVY (calculated)

-1.208

Length

174 amino acids

Sequence
(BLAST)

001: MSSSGRSTAV AAGDLQIVAA SGRQVAALPP RPPASSSTAL VEYTPPAANP EEEDLEIKLR RILECVPVRV SNTSGSSAGS GSGDFHQYRQ MRRREQDRLA
101: RMDVDYQRRK EVAEFNLRRE EKVKAAEERT AKKRARRQKK KQRKKEKKIN SGAGGEETRR EESSDDDEAD SDHQ

Best Arabidopsis Sequence Match ( AT2G15270.1 )
(BLAST)

001: MSSGKPKQGD TRLVVAATTA SALMEAKKAD HGGSSSIVEY KPPVMLEDEE DLEVKLRRIL ENVPVRVSNT SGSSAGSGSG DFHQYRQMRR REQDRLTRMD
101: IDYNKRLKMA EFTIRREEKQ KAAEEKTSKK RLKRQKKKQK KQEKKQKPNT TEEEVKQPRV GEISSDEGED EVEEESVLEP LRPMFNIKFQ ENRS

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SHU9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.