Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P26130_001 | Banana | nucleus | 79.53 | 74.73 |
| KRG91023 | Soybean | nucleus | 61.99 | 62.35 |
| Os09t0104300-01 | Rice | nucleus | 62.57 | 61.14 |
| Solyc01g107610.2.1 | Tomato | nucleus | 61.99 | 60.92 |
| KRH35739 | Soybean | nucleus | 60.23 | 60.59 |
| PGSC0003DMT400066221 | Potato | nucleus | 61.4 | 60.34 |
| VIT_03s0180g00180.t01 | Wine grape | nucleus | 61.99 | 59.55 |
| Zm00001d047310_P001 | Maize | nucleus | 60.82 | 58.76 |
| EER92101 | Sorghum | nucleus | 60.23 | 58.19 |
| TraesCS7D01G444900.1 | Wheat | nucleus | 63.74 | 55.61 |
| EES15636 | Sorghum | nucleus | 57.31 | 54.75 |
| TraesCS7A01G456000.1 | Wheat | nucleus | 61.99 | 54.08 |
| TraesCS7B01G357000.1 | Wheat | nucleus, plastid | 61.99 | 54.08 |
| Zm00001d029576_P002 | Maize | mitochondrion, nucleus | 60.23 | 53.93 |
| TraesCS5B01G340800.1 | Wheat | nucleus | 59.65 | 51.78 |
| TraesCS5D01G346800.1 | Wheat | nucleus | 59.65 | 51.52 |
| TraesCS5A01G341200.1 | Wheat | nucleus | 59.06 | 51.27 |
| AT2G15270.1 | Thale cress | nucleus | 57.31 | 50.52 |
| Bra040613.1-P | Field mustard | nucleus | 57.31 | 50.26 |
| CDY48221 | Canola | nucleus | 56.73 | 49.74 |
| CDX71211 | Canola | nucleus | 54.39 | 48.19 |
| HORVU5Hr1G085580.2 | Barley | nucleus | 60.82 | 44.07 |
| HORVU7Hr1G105220.1 | Barley | nucleus | 64.33 | 36.79 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P13080_001 | EnsemblPlants:GSMUA_Achr3T13080_001 | EnsemblPlantsGene:GSMUA_Achr3G13080_001 | InterPro:DUF1168 | ncoils:Coil | PANTHER:PTHR13507 |
| PFAM:PF06658 | SEG:seg | UniParc:UPI0002963E26 | UniProt:M0SE75 | MapMan:35.2 | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G13080_001]
Coordinates
chr3:+:9599477..9600665
Molecular Weight (calculated)
19118.4 Da
IEP (calculated)
10.209
GRAVY (calculated)
-1.299
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGPSRDGDG SGSDLQLVAV APKTGAAIDA QAGAGGGRGG AMVEYTKSGP MLREEEEDLE VKLRRIMENV PVRVSNTSGS SAGSGSGDFH QYRQMRRKEQ
101: DRLSRMDADY QRRKEVAEFN TRREERLKAA EERTAKKRLK RQKKKQRKKE KKIKPSDGAP KEEEYSEDES L
101: DRLSRMDADY QRRKEVAEFN TRREERLKAA EERTAKKRLK RQKKKQRKKE KKIKPSDGAP KEEEYSEDES L
001: MSSGKPKQGD TRLVVAATTA SALMEAKKAD HGGSSSIVEY KPPVMLEDEE DLEVKLRRIL ENVPVRVSNT SGSSAGSGSG DFHQYRQMRR REQDRLTRMD
101: IDYNKRLKMA EFTIRREEKQ KAAEEKTSKK RLKRQKKKQK KQEKKQKPNT TEEEVKQPRV GEISSDEGED EVEEESVLEP LRPMFNIKFQ ENRS
101: IDYNKRLKMA EFTIRREEKQ KAAEEKTSKK RLKRQKKKQK KQEKKQKPNT TEEEVKQPRV GEISSDEGED EVEEESVLEP LRPMFNIKFQ ENRS
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SHU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.