Factsheet for VIT_03s0180g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107610.2.1	Tomato	nucleus	69.1	70.69
PGSC0003DMT400066221	Potato	nucleus	69.1	70.69
KRG91023	Soybean	nucleus	66.85	70.0
KRH35739	Soybean	nucleus	65.17	68.24
GSMUA_Achr3P13080_001	Banana	nucleus	59.55	61.99
GSMUA_Achr1P26130_001	Banana	nucleus	62.92	61.54
Zm00001d047310_P001	Maize	nucleus	59.55	59.89
Os09t0104300-01	Rice	nucleus	56.74	57.71
EER92101	Sorghum	nucleus	57.3	57.63
Zm00001d029576_P002	Maize	mitochondrion, nucleus	59.55	55.5
EES15636	Sorghum	nucleus	55.06	54.75
AT2G15270.1	Thale cress	nucleus	58.99	54.12
Bra040613.1-P	Field mustard	nucleus	58.43	53.33
TraesCS7A01G456000.1	Wheat	nucleus	58.43	53.06
TraesCS7D01G444900.1	Wheat	nucleus	58.43	53.06
TraesCS7B01G357000.1	Wheat	nucleus, plastid	57.87	52.55
CDX71211	Canola	nucleus	56.74	52.33
CDY48221	Canola	nucleus	57.3	52.31
TraesCS5B01G340800.1	Wheat	nucleus	56.74	51.27
TraesCS5A01G341200.1	Wheat	nucleus	55.62	50.25
TraesCS5D01G346800.1	Wheat	nucleus	55.06	49.49
HORVU5Hr1G085580.2	Barley	nucleus	55.06	41.53
HORVU7Hr1G105220.1	Barley	nucleus	59.55	35.45

Protein Annotations

EntrezGene:100250399	wikigene:100250399	MapMan:35.2	ProteinID:CCB62350	ProteinID:CCB62350.1	ncoils:Coil
InterPro:DUF1168	UniProt:F6I5Y2	EMBL:FN596754	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003725	GO:GO:0004860	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006464	GO:GO:0006469	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	GO:GO:0030234	EntrezGene:LOC100250399
wikigene:LOC100250399	PFAM:PF06658	PANTHER:PTHR13507	TIGR:TC67541	UniParc:UPI00015C90BC	ArrayExpress:VIT_03s0180g00180
EnsemblPlantsGene:VIT_03s0180g00180	EnsemblPlants:VIT_03s0180g00180.t01	unigene:Vvi.8269	RefSeq:XP_002285382	RefSeq:XP_002285382.1	SEG:seg

Description

No Description!

Coordinates

chr3:-:6106602..6118797

Molecular Weight (calculated)

20156.8 Da

IEP (calculated)

9.625

GRAVY (calculated)

-1.239

Length

178 amino acids

Sequence
(BLAST)

001: MSSGRSKSLT DGDLQVIPAP EKPKPALPPL PPVVGSMALV EYAPPAPLED EEDLEVKLRR IIDHVPVRVS NTSGSSAGSG SGDFHQYRQM RRKEQDRLAR
101: MDVDYQRRKE IAEFNMRQEE RMKAAEERTA KKRLKRQKKK QKKKEKKIKL NAGGEEQQKE ESSDDDGDSS ENGEDIVK

Best Arabidopsis Sequence Match ( AT2G15270.1 )
(BLAST)

001: MSSGKPKQGD TRLVVAATTA SALMEAKKAD HGGSSSIVEY KPPVMLEDEE DLEVKLRRIL ENVPVRVSNT SGSSAGSGSG DFHQYRQMRR REQDRLTRMD
101: IDYNKRLKMA EFTIRREEKQ KAAEEKTSKK RLKRQKKKQK KQEKKQKPNT TEEEVKQPRV GEISSDEGED EVEEESVLEP LRPMFNIKFQ ENRS

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SHU9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.