Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY65427 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G15270.1 | CDY65427 | AT4G25920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040613.1-P | Field mustard | nucleus | 94.82 | 93.85 |
| CDY48221 | Canola | nucleus | 94.82 | 93.85 |
| AT2G15270.1 | Thale cress | nucleus | 79.79 | 79.38 |
| KRG91023 | Soybean | nucleus | 53.37 | 60.59 |
| Solyc01g107610.2.1 | Tomato | nucleus | 53.89 | 59.77 |
| PGSC0003DMT400066221 | Potato | nucleus | 53.89 | 59.77 |
| KRH35739 | Soybean | nucleus | 51.3 | 58.24 |
| VIT_03s0180g00180.t01 | Wine grape | nucleus | 52.33 | 56.74 |
| Os09t0104300-01 | Rice | nucleus | 50.78 | 56.0 |
| GSMUA_Achr1P26130_001 | Banana | nucleus | 51.81 | 54.95 |
| EER92101 | Sorghum | nucleus | 50.26 | 54.8 |
| Zm00001d047310_P001 | Maize | nucleus | 50.26 | 54.8 |
| GSMUA_Achr3P13080_001 | Banana | nucleus | 48.19 | 54.39 |
| EES15636 | Sorghum | nucleus | 48.7 | 52.51 |
| Zm00001d029576_P002 | Maize | mitochondrion, nucleus | 50.26 | 50.79 |
| TraesCS7B01G357000.1 | Wheat | nucleus, plastid | 51.3 | 50.51 |
| TraesCS7D01G444900.1 | Wheat | nucleus | 50.78 | 50.0 |
| TraesCS7A01G456000.1 | Wheat | nucleus | 50.26 | 49.49 |
| TraesCS5B01G340800.1 | Wheat | nucleus | 49.22 | 48.22 |
| TraesCS5A01G341200.1 | Wheat | nucleus | 48.7 | 47.72 |
| TraesCS5D01G346800.1 | Wheat | nucleus | 48.19 | 46.97 |
| HORVU5Hr1G085580.2 | Barley | nucleus | 49.22 | 40.25 |
| HORVU7Hr1G105220.1 | Barley | nucleus | 50.78 | 32.78 |
Protein Annotations
| EnsemblPlants:CDX71211 | EnsemblPlantsGene:GSBRNA2T00144778001 | InterPro:DUF1168 | ncoils:Coil | PANTHER:PTHR13507 | PFAM:PF06658 |
| ProteinID:CDX71211 | ProteinID:CDX71211.1 | SEG:seg | UniParc:UPI0004EC8E04 | MapMan:35.2 | : |
Description
BnaC07g04900D
Coordinates
chrLK031792:+:1182215..1183971
Molecular Weight (calculated)
22312.4 Da
IEP (calculated)
10.343
GRAVY (calculated)
-1.379
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTGKPKQEG DTRLVVAATT ASALMEAKKA DSGGSTSIVE YKPPVMLEDE EDLEIKLRRI LENVPVRVSN TSGSSAGSGS GDFHQYRQMR RREQDRLTRM
101: DIDYNKRLKM AEFTIRREEK VKAAEEKTSK KRLKRQKKKQ RKQEKKRKPN TEEQGEQPRE EVSSEDEGNE EESVVEARPR PIFNKSRFQE KRP
101: DIDYNKRLKM AEFTIRREEK VKAAEEKTSK KRLKRQKKKQ RKQEKKRKPN TEEQGEQPRE EVSSEDEGNE EESVVEARPR PIFNKSRFQE KRP
001: MSSGKPKQGD TRLVVAATTA SALMEAKKAD HGGSSSIVEY KPPVMLEDEE DLEVKLRRIL ENVPVRVSNT SGSSAGSGSG DFHQYRQMRR REQDRLTRMD
101: IDYNKRLKMA EFTIRREEKQ KAAEEKTSKK RLKRQKKKQK KQEKKQKPNT TEEEVKQPRV GEISSDEGED EVEEESVLEP LRPMFNIKFQ ENRS
101: IDYNKRLKMA EFTIRREEKQ KAAEEKTSKK RLKRQKKKQK KQEKKQKPNT TEEEVKQPRV GEISSDEGED EVEEESVLEP LRPMFNIKFQ ENRS
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SHU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.