Factsheet for Bra030600.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002427.1-P
Bra040613.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05020.1	Bra040613.1-P	AT2G15270.1	21798944
AT1G05020.1	Bra002427.1-P	AT5G22780.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15531	Canola	cytosol, golgi, nucleus	90.23	95.41
Bra015381.1-P	Field mustard	cytosol	71.32	72.21
AT1G05020.1	Thale cress	cytosol	72.71	71.82
VIT_12s0059g01330.t01	Wine grape	cytosol	43.72	47.72
PGSC0003DMT400036091	Potato	cytosol	47.29	42.01
Solyc12g006000.1.1	Tomato	cytosol	47.29	41.9
Solyc07g049380.1.1	Tomato	cytosol	45.43	39.43
PGSC0003DMT400001773	Potato	nucleus	45.12	38.65
GSMUA_Achr2P18700_001	Banana	cytosol	27.75	35.73
KRH17907	Soybean	cytosol	40.16	35.48
GSMUA_Achr7P02300_001	Banana	plastid	27.13	34.65
Bra007800.1-P	Field mustard	cytosol	26.82	28.22
Bra011333.1-P	Field mustard	cytosol	27.29	28.07
Bra034252.1-P	Field mustard	cytosol	27.13	26.96
Bra030518.1-P	Field mustard	mitochondrion	23.72	25.93
Bra036250.1-P	Field mustard	mitochondrion	24.03	25.79
Bra032561.1-P	Field mustard	mitochondrion	23.1	24.96
Bra033960.1-P	Field mustard	mitochondrion	13.64	24.18
Bra012491.1-P	Field mustard	mitochondrion	13.95	23.81
Bra024772.1-P	Field mustard	mitochondrion	13.64	23.34
Bra024871.1-P	Field mustard	cytosol	20.62	23.29
Bra028000.1-P	Field mustard	mitochondrion	13.02	22.64
Bra017439.1-P	Field mustard	cytosol	20.0	22.59
Bra026195.1-P	Field mustard	cytosol	12.4	22.47
Bra038937.1-P	Field mustard	mitochondrion	18.76	22.0
Bra004282.1-P	Field mustard	mitochondrion	11.94	21.33
Bra033369.1-P	Field mustard	cytosol	15.5	21.32
Bra020460.1-P	Field mustard	cytosol	19.53	21.21
Bra002750.1-P	Field mustard	cytosol	19.07	20.74
Bra013934.1-P	Field mustard	cytosol	17.98	19.3
Bra026647.1-P	Field mustard	cytosol	20.16	18.06
Bra026179.1-P	Field mustard	cytosol, mitochondrion	19.22	16.19

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.1	InterPro:ANTH_dom	EnsemblPlantsGene:Bra030600	EnsemblPlants:Bra030600.1
EnsemblPlants:Bra030600.1-P	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136
GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M4EP80
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF26	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI00025454FA	SEG:seg	:	:	:

Description

AT1G05020 (E=8e-141) | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related

Coordinates

chrA08:+:21152306..21154421

Molecular Weight (calculated)

71221.8 Da

IEP (calculated)

6.864

GRAVY (calculated)

-0.565

Length

645 amino acids

Sequence
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVTNGANRS RGGDLTTLEV AILKATSHDE DVPIDDRLVS DILSIISSKK SHAPACAAAI GRRIGRTRSW IVALKSLVLV
101: LRIFQDGDPY FPREVLHAMK RGAKILNLST FRDDSNSRPW DYTAFVRTYA LYLDERLDCF LTGKLQRRYT TNNKNQTGIR SRFNPRIRNK TDEPAVRDMK
201: PATLLDKITY WQRLLDRAIA TRPTGDAKAN KLVKTSLYAV AQESFDLYRD ISDGLALLLD SFFHLPYKSC IHAFQASVRA SKQFEEVIGF YDLCKANGVG
301: RTSEYPSVQK ISMELLETLQ EFLKDQSSFP GNNAGMYPSP NSLLLPPPPS TVSSSLSERC CSDYGSFRED AGTSSPSMSC RSEPYGGGGG REDLSGNSFD
401: TVSTKSLPNT PSSVTLKMLD DKERKKKKQE EASDPWEALM LRDEPRKNIE TIPEEPSTTS ERQRDSGNWL LALEETVTTQ VEDTNSMAIV PFGLDDHMPA
501: FQATMEQHNP FLVEPAQPVA KSGELMSTAF SALAVTEFRG NVPDDFVPSS APAFKATGSL PGKCEPFATF ESFGLGESVS ENGGEKSELY NNCITPSPSR
601: SGPKALSNDK PDVRKEMTKT EKPENDSKQL NSSQRKEISE NSSSP

Best Arabidopsis Sequence Match ( AT1G05020.1 )
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS

Arabidopsis Description

AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.