CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91023
KRH22743
KRH26563
KRH35739

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05020.1	KRG91023	AT2G15270.1	21798944
AT1G05020.1	KRH35739	AT2G15270.1	21798944
AT1G05020.1	KRH22743	AT5G22780.1	15054111
AT1G05020.1	KRH26563	AT5G22780.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0059g01330.t01	Wine grape	cytosol	41.51	51.27
CDY18283	Canola	cytosol, nucleus, peroxisome	33.56	51.04
CDY53396	Canola	cytosol	39.32	48.24
Bra015381.1-P	Field mustard	cytosol	39.45	45.21
CDY15531	Canola	cytosol, golgi, nucleus	37.4	44.75
AT1G05020.1	Thale cress	cytosol	39.45	44.1
PGSC0003DMT400036091	Potato	cytosol	42.19	42.42
Solyc12g006000.1.1	Tomato	cytosol	41.92	42.03
CDX86594	Canola	cytosol, golgi, nucleus	36.44	40.92
Bra030600.1-P	Field mustard	cytosol, golgi, nucleus	35.48	40.16
Solyc07g049380.1.1	Tomato	cytosol	39.73	39.03
PGSC0003DMT400001773	Potato	nucleus	40.14	38.91
KRH05593	Soybean	cytosol	4.52	38.37
GSMUA_Achr2P18700_001	Banana	cytosol	25.48	37.13
GSMUA_Achr7P02300_001	Banana	plastid	24.11	34.85
KRH52429	Soybean	endoplasmic reticulum	24.38	27.77
KRH61760	Soybean	mitochondrion	24.25	27.15
KRH10492	Soybean	cytosol, mitochondrion	21.92	26.85
KRH58332	Soybean	mitochondrion	20.96	26.15
KRH43936	Soybean	cytosol, mitochondrion	21.23	26.14
KRH20132	Soybean	cytosol	21.64	25.82
KRH38239	Soybean	cytosol	18.49	24.37
KRH42533	Soybean	cytosol	18.63	23.94
KRH58627	Soybean	nucleus	18.49	23.73
KRH60451	Soybean	mitochondrion	13.97	23.02
KRH58584	Soybean	mitochondrion	12.33	22.56
KRH20163	Soybean	cytosol	16.71	22.34
KRH42490	Soybean	cytosol	12.33	22.28
KRH03643	Soybean	mitochondrion	16.58	22.08
KRH02791	Soybean	cytosol	17.12	21.78
KRH19094	Soybean	cytosol	16.99	21.6
KRH41749	Soybean	cytosol	8.36	21.55
KRH38757	Soybean	cytosol, nucleus, peroxisome	12.74	21.43
KRG89239	Soybean	cytosol, mitochondrion	11.1	21.09
KRH12315	Soybean	cytosol	16.99	20.81
KRH09259	Soybean	cytosol, nucleus, peroxisome	12.19	20.7
KRH37330	Soybean	cytosol	16.85	20.64
KRH49763	Soybean	mitochondrion	10.41	19.54
KRH54979	Soybean	cytosol	12.33	17.79

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100796749	MapMan:22.1.6.1	EMBL:ACUP02007894	InterPro:ANTH_dom
InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	EnsemblPlantsGene:GLYMA_13G026400	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136
GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:K7LYR1
EnsemblPlants:KRH17907	ProteinID:KRH17907	ProteinID:KRH17907.1	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF26	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI000233C475	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:5845494..5847686

Molecular Weight (calculated)

82066.9 Da

IEP (calculated)

5.155

GRAVY (calculated)

-0.468

Length

730 amino acids

Sequence
(BLAST)

001: MPSKLRNAIG AVKDQTSISL AKVTNAANLE VTILKATNHD KNPIEERHVN EILNIVSSNK VYAAACAHYI GKRIGKTRNW VVALKCLMIV LRIFQDGDPY
101: FPREVFHAMK RGAKILNLSN FKDNSNSSSW DYTAFIRTFA LYLDERLDCF LTGKLQRRFT YHNQFHERNQ KNKLSNEPGI KDMKPTMVLD RISHWQRLLD
201: RAIGSRPTGL ARTNRLVQIS LYAIVRESFD LYRDISDGLA VVLDSFFNLP FLASAATFNA CVKSYKQFDE LSTFYSFCAS IGVGRSYDYP RVAKVSEELM
301: ETLQDFLNDQ ASFPTNNSSK HFLFPPPKDH TGPSSSQDEA SERYGTLERF FEIGSESGSQ CTSLEDLMSA TDAAMSPRRS LEQDMYSEQS DQDEKESLYD
401: DYAIANGPDS TKSFSIDQTS RSSLDVVSFN ELQLEVQQNE KKLWEQQNIN ASSHNSSKDC WELVLAKTVT APIETSPKLA NGFHPSVTLF DQASVPQDKY
501: NPFLDDTTIV APPVTTSDNF IDVFDFDVAP TFKATTQTFY AQDLVVTTFS DQSSNSIANP DVIFGDMYPN ETTNEATFRA QGSSAKNNMI VPLNSNTKTS
601: DNMITTPSFQ SQCSFKNASL PTFQMHKSNL DAIMEAPTLI SPQNPNLSIL PIHFQAHNLY ASTIPPTFSA KDCNETTLAA SIEDDPFGPW PSTNTNEQTL
701: NNVSMQEDTL SRQQQLWLEQ QQKIISKHLT

Best Arabidopsis Sequence Match ( AT1G05020.1 )
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS

Arabidopsis Description

AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.