CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41749	Soybean	cytosol	55.53	86.93
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	47.18	47.5
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	44.02	47.1
KRH05593	Soybean	cytosol	6.09	31.4
KRH38757	Soybean	cytosol, nucleus, peroxisome	20.54	20.97
KRH09259	Soybean	cytosol, nucleus, peroxisome	19.86	20.47
KRH42533	Soybean	cytosol	25.28	19.72
KRH58627	Soybean	nucleus	25.28	19.68
KRH20163	Soybean	cytosol	24.15	19.6
KRH42490	Soybean	cytosol	17.83	19.55
KRH38239	Soybean	cytosol	24.15	19.31
KRH58584	Soybean	mitochondrion	17.38	19.3
KRH03643	Soybean	mitochondrion	23.7	19.16
KRH10492	Soybean	cytosol, mitochondrion	25.51	18.96
KRH20132	Soybean	cytosol	25.96	18.79
KRH43936	Soybean	cytosol, mitochondrion	24.83	18.55
KRH02791	Soybean	cytosol	23.7	18.29
KRH58332	Soybean	mitochondrion	24.15	18.29
KRG89239	Soybean	cytosol, mitochondrion	15.58	17.97
KRH61760	Soybean	mitochondrion	26.41	17.94
KRH19094	Soybean	cytosol	23.25	17.94
KRH52429	Soybean	endoplasmic reticulum	25.96	17.94
KRH37330	Soybean	cytosol	23.48	17.45
KRH12315	Soybean	cytosol	23.48	17.45
KRH54979	Soybean	cytosol	19.86	17.39
KRH49763	Soybean	mitochondrion	14.0	15.94
KRH17907	Soybean	cytosol	23.02	13.97

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100809332	MapMan:35.1	EMBL:ACUP02003364	InterPro:ANTH_dom
InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	EnsemblPlantsGene:GLYMA_05G241300	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136
GO:GO:0030276	GO:GO:0048268	UniProt:I1K5H4	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712
EnsemblPlants:KRH60451	ProteinID:KRH60451	ProteinID:KRH60451.1	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF22	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI000233A9C6	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:41618611..41620223

Molecular Weight (calculated)

50661.4 Da

IEP (calculated)

5.339

GRAVY (calculated)

-0.258

Length

443 amino acids

Sequence
(BLAST)

001: MQRRFRRVCT CLKERSCMSY AKIASASGFS DINLIIIKAT APDDLPLHEK YIQHLLKLFS ISPSTCHSFA ISFTRRFGTT RCWRVALKCL ILLHRLLRSV
101: PGNSSLWTEL LWTRSNALIS LYPCHFKDDS SSCPVSYTNF VISYARLLDE ALNCVALDCT NLEDQDLEQN EEAMDETFRE KMKEMGQVLE MLPQLQSLID
201: RVMECYPVGV AARSFIVQVA MKLIIRDSFV CYTKFRREIV TVLDNLLEMP YRNCIAAFNI YKKAAAQTNE LYEFYEWCKA KGLCGMYEYP LVEPIPYIQI
301: KALESFLSGM WQLTESSTSP TTSTSPSSSG DSPSNFSQGQ IVMRRDVVNI KGEEEKPLIE LELEEDNGDV SWETLLETSI SFSHAYQRDL GSLFNHRGWE
401: GGFHIEQHGF DANEGHDHER ADATWNMAVN KNTTANNPFS EPY

Best Arabidopsis Sequence Match ( AT5G57200.1 )
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Arabidopsis Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.