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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH61760 Soybean mitochondrion 96.26 94.63
KRH05593 Soybean cytosol 11.54 86.05
CDX76976 Canola cytosol 75.19 81.28
CDY35361 Canola cytosol 74.88 81.22
CDX68831 Canola cytosol 73.01 79.19
CDX75232 Canola cytosol 73.01 78.92
VIT_04s0008g05540.t01 Wine grape cytosol 80.97 78.28
PGSC0003DMT400035762 Potato cytosol 77.38 77.62
AT2G25430.1 Thale cress cytosol 78.94 77.49
CDY11530 Canola cytosol 70.05 77.41
PGSC0003DMT400040963 Potato cytosol 77.38 77.38
AT4G32285.2 Thale cress cytosol 76.44 77.17
Bra034252.1-P Field mustard cytosol 78.0 77.04
Bra011333.1-P Field mustard cytosol 75.19 76.87
Solyc08g059660.1.1 Tomato cytosol 76.13 76.73
Solyc06g011450.1.1 Tomato cytosol 72.07 75.24
Bra007800.1-P Field mustard cytosol 71.92 75.2
CDX76977 Canola cytosol 60.84 74.71
CDX76760 Canola cytosol 53.2 73.02
Zm00001d030399_P001 Maize cytosol 38.85 71.14
TraesCS4D01G208100.1 Wheat cytosol, mitochondrion, plastid 61.15 70.0
Zm00001d046121_P001 Maize cytosol 38.69 68.32
EER92480 Sorghum cytosol, mitochondrion, plastid 67.55 67.13
Zm00001d047804_P001 Maize plasma membrane 65.99 66.72
GSMUA_Achr9P03950_001 Banana cytosol, mitochondrion, plastid 54.76 66.6
Os03t0275500-01 Rice plasma membrane 67.39 66.36
Zm00001d028620_P001 Maize plasma membrane 66.15 66.35
TraesCS4B01G207200.1 Wheat cytosol, mitochondrion, plastid 65.99 66.3
TraesCS4A01G097200.1 Wheat cytosol, mitochondrion, plastid 65.52 65.83
HORVU4Hr1G059660.3 Barley cytosol, mitochondrion, plastid 65.83 65.33
KRH20132 Soybean cytosol 61.47 64.38
GSMUA_Achr11P... Banana cytosol 43.37 60.96
Os05t0112101-01 Rice plasma membrane 50.7 55.94
GSMUA_Achr6P33420_001 Banana cytosol, mitochondrion, plastid 54.91 55.7
TraesCS1A01G035100.1 Wheat cytosol 52.26 54.38
TraesCS1D01G036500.1 Wheat cytosol 51.79 53.72
TraesCS1B01G044800.1 Wheat cytosol 51.79 53.72
HORVU1Hr1G005290.1 Barley cytosol 51.33 53.24
Zm00001d035652_P001 Maize cytosol 46.18 49.58
KRH43936 Soybean cytosol, mitochondrion 45.71 49.41
KRH10492 Soybean cytosol, mitochondrion 45.87 49.33
KRH58332 Soybean mitochondrion 44.31 48.55
EES18894 Sorghum cytosol 46.8 48.15
KRH38239 Soybean cytosol 28.08 32.49
KRH20163 Soybean cytosol 27.46 32.23
KRH58627 Soybean nucleus 28.55 32.16
KRH03643 Soybean mitochondrion 27.3 31.93
KRH42533 Soybean cytosol 28.24 31.87
KRH02791 Soybean cytosol 28.08 31.36
KRH19094 Soybean cytosol 27.61 30.84
KRH12315 Soybean cytosol 27.93 30.03
KRH37330 Soybean cytosol 27.61 29.7
KRH41749 Soybean cytosol 12.32 27.92
KRH60451 Soybean mitochondrion 17.94 25.96
KRG89239 Soybean cytosol, mitochondrion 15.13 25.26
KRH09259 Soybean cytosol, nucleus, peroxisome 16.85 25.12
KRH38757 Soybean cytosol, nucleus, peroxisome 16.85 24.88
KRH58584 Soybean mitochondrion 15.44 24.81
KRH42490 Soybean cytosol 15.6 24.75
KRH17907 Soybean cytosol 27.77 24.38
KRH49763 Soybean mitochondrion 14.04 23.14
KRH54979 Soybean cytosol 17.32 21.94
Protein Annotations
Gene3D:1.20.58.150Gene3D:1.25.40.90EntrezGene:100787076MapMan:22.1.4.6EMBL:ACUP02003419InterPro:ANTH_dom
InterPro:Clathrin_AP_dom2InterPro:ENTHInterPro:ENTH_VHSEnsemblPlantsGene:GLYMA_06G067800GO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0005543GO:GO:0005545GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0008150GO:GO:0008289GO:GO:0009987GO:GO:0016043GO:GO:0030136
GO:GO:0030276GO:GO:0048268UniProt:I1K8U2InterPro:IPR008942InterPro:IPR013809InterPro:IPR014712
EnsemblPlants:KRH52429ProteinID:KRH52429ProteinID:KRH52429.1PFAM:PF07651PFscan:PS50942PANTHER:PTHR22951
PANTHER:PTHR22951:SF13SMART:SM00273SUPFAM:SSF48464SUPFAM:SSF89009UniParc:UPI000233A2B7SEG:seg
Description
hypothetical protein
Coordinates
chr6:+:5176850..5179771
Molecular Weight (calculated)
70301.6 Da
IEP (calculated)
5.447
GRAVY (calculated)
-0.445
Length
641 amino acids
Sequence
(BLAST)
001: MAPTTIRKAI GVVKDQTSIG IAKVASNMAP EMEVAIVKAT SHDDDPASDK YIREILNLMS HSRGYVHACV TAVSKRLGKT RDWIVALKAL MLVHRLMNDG
101: PPLFQEEILY ATRRGTRLLN MSDFRDEAHS SSWDHSAFVR TYALYLDQRL ELMLFDRKGT VSAANGGGDD RFGGRDNFQS PPYEYGGGEF RGEGAYGNGM
201: RKTRSYGDMS ESVGRGEEKR VVSVTPLRDM TPERVFGKMG HLQRLLDRFL ACRPTGLAKN SRMVLIALYP VVKESFQLYA DICEVLAVLL DKFFDMEYAD
301: CVKAFDAYAS AAKQIDELVA FYNWCKDTGV ARSSEYPEVQ KITSKLLETL EEFVRDRAKR PKSPERKEEA PPVEKVEEEP APDMNEIKAL PPPENYTPPP
401: PPEPEPKPQP QVTEDLVNLR DDAVTADDQG NKFALALFAG APANNANGSW EAFPSNGQPE VTSAWQTPAA EPGKADWELA LVETASNLSK QKAALGGGLD
501: PLLLTGMYDQ GMVRQHVSTT QLSGGSASSV ALPGPGKTPV LALPAPDGSV QPVNQDPFAA SLSVPPPSYV QMADMEKKQH LLVQEQQVWH QYARDGMQGQ
601: SSLAKLNGAG YYAGGPMPMM PYGMPPVNGM GPPTGYYHTP Y
Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)
001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY
Arabidopsis Description
Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.