Factsheet for GSMUA_Achr6P33420_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	63.45	76.09
GSMUA_Achr11P...	Banana	cytosol	48.73	67.54
Zm00001d046121_P001	Maize	cytosol	36.55	63.64
KRH05593	Soybean	cytosol	8.54	62.79
Zm00001d030399_P001	Maize	cytosol	34.18	61.71
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	53.96	60.89
EER92480	Sorghum	cytosol, mitochondrion, plastid	59.97	58.76
Zm00001d028620_P001	Maize	plasma membrane	58.86	58.22
Zm00001d047804_P001	Maize	plasma membrane	58.39	58.2
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	58.23	57.68
Os03t0275500-01	Rice	plasma membrane	59.18	57.45
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	57.75	57.21
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	58.39	57.12
CDY35361	Canola	cytosol	53.32	57.02
CDX76976	Canola	cytosol	53.48	57.0
CDX75232	Canola	cytosol	53.16	56.66
CDX68831	Canola	cytosol	52.85	56.51
CDY11530	Canola	cytosol	50.47	55.0
KRH52429	Soybean	endoplasmic reticulum	55.7	54.91
Bra011333.1-P	Field mustard	cytosol	53.64	54.07
KRH61760	Soybean	mitochondrion	55.54	53.83
VIT_04s0008g05540.t01	Wine grape	cytosol	55.85	53.24
AT4G32285.2	Thale cress	cytosol	53.48	53.23
PGSC0003DMT400035762	Potato	cytosol	53.8	53.21
Solyc08g059660.1.1	Tomato	cytosol	53.32	52.99
Bra007800.1-P	Field mustard	cytosol	51.11	52.69
Bra034252.1-P	Field mustard	cytosol	53.8	52.39
AT2G25430.1	Thale cress	cytosol	54.11	52.37
PGSC0003DMT400040963	Potato	cytosol	52.85	52.11
Solyc06g011450.1.1	Tomato	cytosol	49.05	50.49
VIT_11s0016g05480.t01	Wine grape	cytosol	49.37	49.29
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	47.15	48.38
Solyc07g008060.1.1	Tomato	cytosol	46.04	47.39
CDX76977	Canola	cytosol	39.08	47.32
KRH20132	Soybean	cytosol	44.94	46.41
GSMUA_Achr10P...	Banana	mitochondrion	37.03	46.34
CDX76760	Canola	cytosol	33.7	45.61
GSMUA_Achr11P...	Banana	cytosol	37.03	45.0
Os05t0112101-01	Rice	plasma membrane	40.66	44.23
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	36.23	43.13
TraesCS1A01G035100.1	Wheat	cytosol	41.77	42.86
TraesCS1D01G036500.1	Wheat	cytosol	41.14	42.07
TraesCS1B01G044800.1	Wheat	cytosol	40.98	41.91
HORVU1Hr1G005290.1	Barley	cytosol	39.56	40.45
Zm00001d035652_P001	Maize	cytosol	37.66	39.87
EES18894	Sorghum	cytosol	37.97	38.52
GSMUA_Achr2P18700_001	Banana	cytosol	24.53	30.94
GSMUA_Achr7P02300_001	Banana	plastid	23.73	29.7
GSMUA_Achr4P13420_001	Banana	cytosol	23.89	28.28
GSMUA_Achr4P20660_001	Banana	cytosol	24.68	28.01
GSMUA_Achr1P15690_001	Banana	cytosol	24.37	27.55
GSMUA_Achr7P04960_001	Banana	cytosol	23.73	27.27
GSMUA_Achr6P03060_001	Banana	cytosol	23.58	27.24
GSMUA_Achr9P21890_001	Banana	cytosol	24.05	27.14
GSMUA_Achr4P05920_001	Banana	cytosol	23.42	27.01
GSMUA_Achr5P23570_001	Banana	cytosol	23.26	26.97
GSMUA_Achr3P05590_001	Banana	cytosol	21.99	25.46
GSMUA_Achr7P18620_001	Banana	mitochondrion	13.29	21.65
GSMUA_Achr3P20230_001	Banana	mitochondrion	10.92	20.85
GSMUA_Achr7P02390_001	Banana	cytosol	13.29	20.19
GSMUA_Achr8P22890_001	Banana	mitochondrion	11.87	18.89

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSMUA_Achr6G33420_001
EnsemblPlants:GSMUA_Achr6P33420_001	EnsemblPlants:GSMUA_Achr6T33420_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0TCD5
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF13	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI0002948C5E	SEG:seg	:	:	:

Description

Probable clathrin assembly protein At4g32285 [Source:GMGC_GENE;Acc:GSMUA_Achr6G33420_001]

Coordinates

chr6:+:32463398..32467174

Molecular Weight (calculated)

70279.7 Da

IEP (calculated)

6.767

GRAVY (calculated)

-0.343

Length

632 amino acids

Sequence
(BLAST)

001: MAPSIRKALG TVKDQTSIGL AKVSSNMAPE LDVAIVKATS HDDEPANEKY LREILSMTSY SRGYVSACIA TVSKRLGKTR DWVVAVKALV LVHRLLVDGD
101: PAFQHEILYA TRRGTRLLNM SDFRDEAHSN SWDHSAFVRT YALYLDQRLE SSYSYPPRDG GAGYDERQNG EDKKPPTPLR DMRPERVLGR MHHFQQLLDR
201: FLACRPTGNA KFSRMILIAL YPIVRESFQL YADICEILAV LLDRFFDMDY ADCVKSFEAY ASAAKQIDEL CTFYAWCKDT GVARSSEYPE VQRITEKLLE
301: TLEEFMRDRA RRPKSPPREA IPAATMDRER EPEQDMNSIK ALPAPSDYKE EEPEPAKVGV EPVKQQPQQQ QTDLVDLRED GSSTDDQSNK LALALFQGPV
401: AGSGVVRQQV NAQINGGSAS SVALPVPGRG AAPVLALPAP DGTVQTIGQD PFVASLSIPP PSYVQMADVE KKQQLLVQEQ VLWQQYAKDG MQGQSSLAKL
501: NNIFIPNPTM PYGMPTAYNP AAQFVDCRSS PDTICINNYL VYVSRFVSDS YGGICSVALD RVNVLGSHTS LCCAAAIRNL CLCSCLPLLT QQAAQKSRTY
601: VGLTNYNSML KSSLSWQLID PFVKRGRHNN TF

Best Arabidopsis Sequence Match ( AT4G32285.2 )
(BLAST)

001: MALSMRKAIG VVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDQSSDKY IREILSLTSL SRGYVHACVT SVSRRLKKTR DWIVALKALM LVHRLLNEGD
101: PLFQEEILYA TRRGTRILNM SDFRDEAHSS SWDHSAFVRT YASYLDQRLE LALFERRGRN GGGSSSSHQS NGDDGYNRSR DDFRSPPPRT YDYETGNGFG
201: MPKRSRSFGD VNEIGAREEK KSVTPLREMT PERIFGKMGH LQRLLDRFLS CRPTGLAKNS RMILIAMYPV VKESFRLYAD ICEVLAVLLD KFFDMEYTDC
301: VKAFDAYASA AKQIDELIAF YHWCKDTGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRA KSPERKEIEA PPAPAPPVEE PVDMNEIKAL PPPENHTPPP
401: PPAPEPKPQQ PQVTDDLVNL REDDVSGDDQ GNKFALALFA GPPANNGKWE AFSSDNNVTS AWQNPAAELG KADWELALVE TASNLEHQKA AMGGGLDPLL
501: LNGMYDQGAV RQHVSTSELT GGSSSSVALP LPGKVNSHIL ALPAPDGTVQ KVNQDPFAAS LTIPPPSYVQ MAEMDKKQYL LTQEQQLWQQ YQQEGMRGQA
601: SLAKMNTAQT AMPYGMPPVN GMGPSPMGYY YNNPY

Arabidopsis Description

Probable clathrin assembly protein At4g32285 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.