Factsheet for VIT_11s0016g05480.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g05540.t01	Wine grape	cytosol	72.99	69.68
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	67.61	69.48
Solyc07g008060.1.1	Tomato	cytosol	67.3	69.38
KRH20132	Soybean	cytosol	65.88	68.14
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	58.29	65.89
Zm00001d030399_P001	Maize	cytosol	36.02	65.14
Zm00001d047804_P001	Maize	plasma membrane	63.19	63.09
EER92480	Sorghum	cytosol, mitochondrion, plastid	64.14	62.95
Zm00001d028620_P001	Maize	plasma membrane	63.19	62.6
Zm00001d046121_P001	Maize	cytosol	35.86	62.53
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	51.97	62.43
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	62.4	61.91
Os03t0275500-01	Rice	plasma membrane	63.35	61.6
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	61.93	61.44
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	61.93	60.68
GSMUA_Achr11P...	Banana	cytosol	41.55	57.68
Os05t0112101-01	Rice	plasma membrane	48.66	53.01
TraesCS1A01G035100.1	Wheat	cytosol	51.34	52.76
TraesCS1B01G044800.1	Wheat	cytosol	51.5	52.75
TraesCS1D01G036500.1	Wheat	cytosol	51.5	52.75
HORVU1Hr1G005290.1	Barley	cytosol	50.39	51.62
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	46.29	50.34
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	49.29	49.37
EES18894	Sorghum	cytosol	48.18	48.96
Zm00001d035652_P001	Maize	cytosol	45.5	48.24
VIT_11s0016g05900.t01	Wine grape	cytosol	25.91	32.28
VIT_12s0059g01330.t01	Wine grape	cytosol	29.23	31.3
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	27.01	30.16
VIT_11s0103g00620.t01	Wine grape	cytosol	27.49	29.44
VIT_11s0037g01000.t01	Wine grape	cytosol	23.7	29.41
VIT_18s0089g01330.t01	Wine grape	cytosol	16.27	25.62
VIT_01s0011g06370.t01	Wine grape	mitochondrion	13.74	22.6

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100252580	wikigene:100252580	MapMan:22.1.4.6	InterPro:ANTH_dom
ProteinID:CCB51594	ProteinID:CCB51594.1	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	UniProt:F6HH98
EMBL:FN595756	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	EntrezGene:LOC100252580	wikigene:LOC100252580	PFAM:PF07651	PFscan:PS50942
PANTHER:PTHR22951	PANTHER:PTHR22951:SF55	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	TIGR:TC69708
UniParc:UPI00019844DA	ArrayExpress:VIT_11s0016g05480	EnsemblPlantsGene:VIT_11s0016g05480	EnsemblPlants:VIT_11s0016g05480.t01	unigene:Vvi.11688	RefSeq:XP_002285283
RefSeq:XP_002285283.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:4859211..4861453

Molecular Weight (calculated)

69608.5 Da

IEP (calculated)

5.167

GRAVY (calculated)

-0.508

Length

633 amino acids

Sequence
(BLAST)

001: MAPSTIKKAI GAVKDQTSIG IAKVAGNVAP DLEVLIVKAT SHDDDPADEK YLREILNLTS YSRGYVSACV VTIAKRLGKT RDWMVALKAL MLVHRLVSDG
101: DPIFKEEIVY ATRRGARLLN MSDFRDEAHS NSWDYSGFVR TYGLYLDEKL EFMVYEKKLS PGGDDDRRRR DEYGDYRDEP MYGMPRRSRS YGDLNESAVR
201: EQKDVGTPVK DMKTERVLGK LNGLMRIVDR FLACRPTGVA KNSRMVLVAL YQIVKESFGL YADISEALAV LQDRFFEMEY ADCVKVFDAH VGAAKLIDEL
301: VGFYNWCRDT GVARSSEYPE VHRITDKVLG SMDGFLKDKG KSSKSPERRE ENPPIVEERE PDMNEIKALP PPENYSPPPP PPPPPSEPQP KPQPQQQTED
401: LVNLRDDAVS ADDQGNKLAL ALFSGPPTSN NNGSWEAFPS NGGPEVTSAW QTPAAESGKA DWELALVETA SNLSKQKNAM AGGFDPLLLN GMYDQGAVRQ
501: HVSTAQLTGG SASSVALPGQ GKNATPVLAL PAPDGTVQAV GHQDPFAASL AVPPPSYVQI ADMEKKQHLL VQEQQVWQQY GREGMQGQVG LAKIGGPGYY
601: SAAAPQQMMQ MMPYGMPPTN GMVQPGGYQY TPY

Best Arabidopsis Sequence Match ( AT4G32285.2 )
(BLAST)

001: MALSMRKAIG VVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDQSSDKY IREILSLTSL SRGYVHACVT SVSRRLKKTR DWIVALKALM LVHRLLNEGD
101: PLFQEEILYA TRRGTRILNM SDFRDEAHSS SWDHSAFVRT YASYLDQRLE LALFERRGRN GGGSSSSHQS NGDDGYNRSR DDFRSPPPRT YDYETGNGFG
201: MPKRSRSFGD VNEIGAREEK KSVTPLREMT PERIFGKMGH LQRLLDRFLS CRPTGLAKNS RMILIAMYPV VKESFRLYAD ICEVLAVLLD KFFDMEYTDC
301: VKAFDAYASA AKQIDELIAF YHWCKDTGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRA KSPERKEIEA PPAPAPPVEE PVDMNEIKAL PPPENHTPPP
401: PPAPEPKPQQ PQVTDDLVNL REDDVSGDDQ GNKFALALFA GPPANNGKWE AFSSDNNVTS AWQNPAAELG KADWELALVE TASNLEHQKA AMGGGLDPLL
501: LNGMYDQGAV RQHVSTSELT GGSSSSVALP LPGKVNSHIL ALPAPDGTVQ KVNQDPFAAS LTIPPPSYVQ MAEMDKKQYL LTQEQQLWQQ YQQEGMRGQA
601: SLAKMNTAQT AMPYGMPPVN GMGPSPMGYY YNNPY

Arabidopsis Description

Probable clathrin assembly protein At4g32285 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.