Factsheet for TraesCS4A01G097200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	87.46	99.64
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	99.37	99.37
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	97.18	95.98
Os03t0275500-01	Rice	plasma membrane	92.95	91.09
EER92480	Sorghum	cytosol, mitochondrion, plastid	91.85	90.85
Zm00001d028620_P001	Maize	plasma membrane	90.91	90.77
Zm00001d047804_P001	Maize	plasma membrane	89.97	90.54
Zm00001d030399_P001	Maize	cytosol	48.43	88.29
Zm00001d046121_P001	Maize	cytosol	50.16	88.15
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	58.46	70.78
CDX76976	Canola	cytosol	63.95	68.8
CDY35361	Canola	cytosol	63.64	68.7
CDY11530	Canola	cytosol	61.13	67.24
CDX68831	Canola	cytosol	61.76	66.67
CDX75232	Canola	cytosol	61.91	66.61
KRH52429	Soybean	endoplasmic reticulum	65.83	65.52
PGSC0003DMT400035762	Potato	cytosol	65.52	65.41
Bra007800.1-P	Field mustard	cytosol	62.54	65.09
Solyc08g059660.1.1	Tomato	cytosol	64.58	64.78
KRH61760	Soybean	mitochondrion	66.14	64.72
Bra034252.1-P	Field mustard	cytosol	65.36	64.25
Bra011333.1-P	Field mustard	cytosol	62.85	63.96
VIT_04s0008g05540.t01	Wine grape	cytosol	66.46	63.95
AT2G25430.1	Thale cress	cytosol	65.36	63.86
PGSC0003DMT400040963	Potato	cytosol	64.11	63.81
CDX76977	Canola	cytosol	52.04	63.6
Solyc06g011450.1.1	Tomato	cytosol	60.34	62.7
CDX76760	Canola	cytosol	45.61	62.31
AT4G32285.2	Thale cress	cytosol	61.91	62.2
VIT_11s0016g05480.t01	Wine grape	cytosol	61.44	61.93
GSMUA_Achr11P...	Banana	cytosol	44.2	61.84
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	58.31	60.39
Solyc07g008060.1.1	Tomato	cytosol	57.21	59.45
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	57.21	57.75
KRH20132	Soybean	cytosol	55.02	57.35
TraesCS1A01G035100.1	Wheat	cytosol	53.92	55.84
KRH05593	Soybean	cytosol	6.43	47.67
TraesCS1A01G266200.1	Wheat	cytosol	43.73	46.12
TraesCS7A01G138400.1	Wheat	cytosol	29.0	32.8
TraesCS1A01G369700.1	Wheat	cytosol, mitochondrion, plastid	28.21	31.86
TraesCS3A01G258900.1	Wheat	cytosol	27.27	31.13
TraesCS7A01G421900.1	Wheat	mitochondrion	27.74	31.05
TraesCS7A01G490500.2	Wheat	cytosol	27.74	30.84
TraesCS6A01G154100.1	Wheat	cytosol	26.65	29.01
TraesCS6A01G370500.1	Wheat	cytosol	25.08	27.49
TraesCS5A01G297400.1	Wheat	mitochondrion	14.89	25.2
TraesCS4A01G227800.1	Wheat	mitochondrion	13.48	21.77

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.4.6	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF13
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:TraesCS4A01G097200	EnsemblPlants:TraesCS4A01G097200.1	TIGR:cd03564
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:106909712..106912315

Molecular Weight (calculated)

70569.8 Da

IEP (calculated)

5.255

GRAVY (calculated)

-0.645

Length

638 amino acids

Sequence
(BLAST)

001: MSSSTIRKAL GAVKDQTSIG LAKVTSNIAP ELDVLIVKTT SHDDEPAEER HIREILHLTS GSRAHVAAAV AGCARRLSRT RDYVVALKSL MLVHRLLTDG
101: DPFFHRELLH ATRRGTRLLN LSDFRDEAHS GSWDHSAFVR TYALYLDQRL EFLLHERKQG SNANGSASLN GPSPRDRWGS PDPYGRRSPS YTSPPGNGYG
201: GYDDNRDSRN GANSDDKRPP TPVRDMKPER VLSRMHHLQQ LLDRFLACRP TGGAKQSRMV LVALYQMARE SFQLYADICE VLAVLLDRFF DMEYADCVKA
301: FEAYASAAKQ IDELCSFYAW CKDTGVARSS EYPEVQRVTD KLLETLEEFM RDRAKRPKSP PQEPEPEPVK EEEPEPDMNS IKALPAPEDY KEPEPEKVEE
401: EVKPEPPPQP QGDLVDLRED TVSADEQGNR LALALFQGPP AAGGSNGSWE AFPSNGGNEV TSAWQNPAAE PGKADWELAL VETASNLSKQ KAVMTGGMDN
501: LLLNGMYDQG VVRQHVNAQA TSGSSSSVAL PAPGQKTQML ALPAPDGSMQ NVGGDPFAAS LTFAPPSYVQ MAEMEKKQQF LTQEQMMWQQ YQRDGMQGPS
601: SLAKLDRTYN NGFGSNPAMP YGMPNAPMAN TGYYYPTY

Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)

001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY

Arabidopsis Description

Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.