Factsheet for PGSC0003DMT400035762

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g059660.1.1	Tomato	cytosol	95.46	95.91
PGSC0003DMT400040963	Potato	cytosol	85.92	85.65
KRH52429	Soybean	endoplasmic reticulum	77.62	77.38
CDX76976	Canola	cytosol	69.95	75.38
CDY35361	Canola	cytosol	69.64	75.3
CDX68831	Canola	cytosol	69.48	75.13
CDX75232	Canola	cytosol	69.64	75.04
KRH61760	Soybean	mitochondrion	76.06	74.54
VIT_04s0008g05540.t01	Wine grape	cytosol	76.68	73.91
Bra011333.1-P	Field mustard	cytosol	71.36	72.73
CDY11530	Canola	cytosol	65.73	72.41
AT4G32285.2	Thale cress	cytosol	71.36	71.81
AT2G25430.1	Thale cress	cytosol	73.08	71.52
Bra034252.1-P	Field mustard	cytosol	71.83	70.72
Bra007800.1-P	Field mustard	cytosol	67.61	70.47
Zm00001d030399_P001	Maize	cytosol	37.87	69.14
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	60.56	69.11
CDX76977	Canola	cytosol	56.02	68.58
CDX76760	Canola	cytosol	49.3	67.45
Zm00001d046121_P001	Maize	cytosol	38.03	66.94
Zm00001d047804_P001	Maize	plasma membrane	65.73	66.25
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	54.62	66.22
Zm00001d028620_P001	Maize	plasma membrane	66.2	66.2
EER92480	Sorghum	cytosol, mitochondrion, plastid	66.67	66.05
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	65.73	65.83
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	65.41	65.52
Os03t0275500-01	Rice	plasma membrane	66.35	65.13
KRH05593	Soybean	cytosol	8.76	65.12
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	62.75	65.1
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	65.26	64.55
GSMUA_Achr11P...	Banana	cytosol	43.51	60.96
Os05t0112101-01	Rice	plasma membrane	50.55	55.59
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	53.21	53.8
TraesCS1A01G035100.1	Wheat	cytosol	51.02	52.92
TraesCS1D01G036500.1	Wheat	cytosol	51.17	52.91
TraesCS1B01G044800.1	Wheat	cytosol	50.86	52.59
HORVU1Hr1G005290.1	Barley	cytosol	49.92	51.62
Zm00001d035652_P001	Maize	cytosol	45.38	48.58
EES18894	Sorghum	cytosol	47.26	48.48
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	44.13	48.45
PGSC0003DMT400059062	Potato	cytosol	43.82	46.98
PGSC0003DMT400075923	Potato	cytosol	27.54	31.26
PGSC0003DMT400036570	Potato	cytosol	26.6	29.67
PGSC0003DMT400025029	Potato	nucleus	12.83	28.87
PGSC0003DMT400017184	Potato	cytosol	19.25	28.54
PGSC0003DMT400036091	Potato	cytosol	30.36	26.72
PGSC0003DMT400075705	Potato	mitochondrion	16.12	26.28
PGSC0003DMT400020390	Potato	cytosol	23.79	25.59
PGSC0003DMT400058608	Potato	mitochondrion	15.65	25.0
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	17.21	25.0
PGSC0003DMT400001773	Potato	nucleus	28.48	24.17

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:102602571	MapMan:22.1.4.6	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M1B2T1	PFAM:PF07651	EnsemblPlantsGene:PGSC0003DMG400013761
PGSC:PGSC0003DMG400013761	EnsemblPlants:PGSC0003DMT400035762	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF13	SMART:SM00273
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI000296C5D5	RefSeq:XP_006343526.1	SEG:seg	:

Description

Clathrin assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013761]

Coordinates

chr8:+:17059433..17062223

Molecular Weight (calculated)

70266.2 Da

IEP (calculated)

4.923

GRAVY (calculated)

-0.448

Length

639 amino acids

Sequence
(BLAST)

001: MAPSTIRKAI GAVKDQTSIG IAKVGSNMAP ELEVAIVKAT SHDDDPASEK YIREILHLTS SSRGYVTACV SSISKRLGKT RDWIVAIKCL MLIHRLLNDG
101: DPVFYQEIMY ATRRGTRLLN LSDFRDEAHS NSWDHSAFVR TYALYLDQRL EMMVFERKQN GGGGEIERYG SREERWRSPP ASNNRGYDYG EFGDEPAYGM
201: RKSRSSGDVR ESTVQDQKDV TPMRQMEPER IFGKMSHLQR LLDRFLSCRP TGLAKNERMV LVTLYPMVKE SFQLYADICE VLAILLDKFF DMEYEDCVKA
301: FDAYASASKQ IDELVGFYNW CKDIGIARSS EYPEVQRITS KLLDTLEEFV RDRAKATKSP ERKVEALPAP PEEPAPDMNE IKALPPPEDY TPPPPPEPES
401: PKPAAVVQET GDLMDLREEG VTADDQGNKF ALALFAGPGT NNGSWEAFSS NGGPEVTSAW QNPAAESGKA DWELALVETA SHLSQQKAAM GGGLDPLLLN
501: GMYDQGMVRQ HVATAQSSGG SASSVALPGL GKSSTPVLAL PAPDGTVQTV GLDPFAASLT VPPPSYVQMA DLEKKQQLLV QEQIVWQQYA RNGMQGQMSL
601: SKISSGGYYG TQPAGMPYGM PPVNGVGVPP AGGYYYTPY

Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)

001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY

Arabidopsis Description

Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.