Factsheet for GSMUA_Achr9P03950_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030399_P001	Maize	cytosol	48.39	72.86
Zm00001d046121_P001	Maize	cytosol	49.91	72.45
KRH05593	Soybean	cytosol	10.82	66.28
GSMUA_Achr11P...	Banana	cytosol	56.55	65.35
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	76.09	63.45
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	64.71	60.89
Zm00001d028620_P001	Maize	plasma membrane	71.73	59.15
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	71.16	58.78
EER92480	Sorghum	cytosol, mitochondrion, plastid	71.92	58.76
Zm00001d047804_P001	Maize	plasma membrane	70.4	58.52
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	70.78	58.46
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	71.35	58.2
Os03t0275500-01	Rice	plasma membrane	71.35	57.76
CDY35361	Canola	cytosol	63.76	56.85
CDX76976	Canola	cytosol	63.76	56.66
CDX68831	Canola	cytosol	63.19	56.35
CDX75232	Canola	cytosol	63.38	56.32
CDY11530	Canola	cytosol	60.53	55.0
KRH52429	Soybean	endoplasmic reticulum	66.6	54.76
PGSC0003DMT400035762	Potato	cytosol	66.22	54.62
Solyc08g059660.1.1	Tomato	cytosol	65.28	54.09
Bra011333.1-P	Field mustard	cytosol	63.95	53.75
VIT_04s0008g05540.t01	Wine grape	cytosol	67.36	53.54
KRH61760	Soybean	mitochondrion	66.22	53.53
PGSC0003DMT400040963	Potato	cytosol	64.71	53.2
Bra007800.1-P	Field mustard	cytosol	61.67	53.02
Bra034252.1-P	Field mustard	cytosol	64.71	52.54
AT2G25430.1	Thale cress	cytosol	65.09	52.53
AT4G32285.2	Thale cress	cytosol	63.19	52.44
VIT_11s0016g05480.t01	Wine grape	cytosol	62.43	51.97
Solyc06g011450.1.1	Tomato	cytosol	60.34	51.79
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	58.44	50.0
Solyc07g008060.1.1	Tomato	cytosol	57.31	49.19
KRH20132	Soybean	cytosol	55.22	47.55
CDX76977	Canola	cytosol	46.11	46.55
Os05t0112101-01	Rice	plasma membrane	51.04	46.3
CDX76760	Canola	cytosol	40.99	46.25
GSMUA_Achr11P...	Banana	cytosol	45.35	45.96
GSMUA_Achr10P...	Banana	mitochondrion	43.83	45.74
TraesCS1A01G035100.1	Wheat	cytosol	52.56	44.97
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	44.59	44.26
TraesCS1D01G036500.1	Wheat	cytosol	51.8	44.17
TraesCS1B01G044800.1	Wheat	cytosol	51.61	44.01
HORVU1Hr1G005290.1	Barley	cytosol	50.47	43.04
Zm00001d035652_P001	Maize	cytosol	47.25	41.71
EES18894	Sorghum	cytosol	47.25	39.97
GSMUA_Achr2P18700_001	Banana	cytosol	29.22	30.74
GSMUA_Achr7P02300_001	Banana	plastid	29.03	30.3
GSMUA_Achr1P15690_001	Banana	cytosol	30.55	28.8
GSMUA_Achr5P23570_001	Banana	cytosol	29.41	28.44
GSMUA_Achr6P03060_001	Banana	cytosol	29.41	28.34
GSMUA_Achr4P13420_001	Banana	cytosol	28.46	28.09
GSMUA_Achr7P04960_001	Banana	cytosol	29.22	28.0
GSMUA_Achr4P05920_001	Banana	cytosol	29.03	27.92
GSMUA_Achr4P20660_001	Banana	cytosol	29.41	27.83
GSMUA_Achr9P21890_001	Banana	cytosol	28.08	26.43
GSMUA_Achr3P05590_001	Banana	cytosol	26.76	25.82
GSMUA_Achr7P18620_001	Banana	mitochondrion	15.37	20.88
GSMUA_Achr3P20230_001	Banana	mitochondrion	12.9	20.54
GSMUA_Achr8P22890_001	Banana	mitochondrion	14.99	19.9
GSMUA_Achr7P02390_001	Banana	cytosol	15.56	19.71

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSMUA_Achr9G03950_001
EnsemblPlants:GSMUA_Achr9P03950_001	EnsemblPlants:GSMUA_Achr9T03950_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0TXA4
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF13	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI0002963D27	SEG:seg	:	:	:

Description

Probable clathrin assembly protein At4g32285 [Source:GMGC_GENE;Acc:GSMUA_Achr9G03950_001]

Coordinates

chr9:-:2672757..2679056

Molecular Weight (calculated)

58478.1 Da

IEP (calculated)

5.397

GRAVY (calculated)

-0.398

Length

527 amino acids

Sequence
(BLAST)

001: MAPSIRKALG TVKDQTSIGL AKVSSNIAPE LDVAIVKATS HDDEPANEKY LREILNMTSY SRGYISACIA TVSKRLGKTH DWIVALKALM LVHRLLVDGD
101: PAFQHEILYA TRRGTRLLNM SDFRDEAHSN SWDHSAFVRT YALYLDQRLE CLVYERKQSD RDPYVYGSYG RSSYSSPPGN GKRILGRMHQ LHQLLDRFLA
201: CRPTGNAKHS RMILVALYPI VRESFQLYAD ICEILAILLD RFFDMDYPDC VKSFEAYASA AKQIDELCSF YAWCKDTGVA RSSEYPEVQR ITDKLLETLE
301: EFMRDRAKRP KSPPREAVPA PTGAGDEEPE QDMNSIKALP APSDYKEEEP EPAKVTVEPV KPQPQQQADL VDLRDDGSSA DDQSNKLALA LFQGPVAAAN
401: GANGSWEAFP SANGDSGVTS AWQTPAAETG KADWEIVLVE TASNLSNQKA TLGDPFAASL SIPPPSYVQM AEIEKKQQLL VQEQVVWQQK GKWVSGCVDP
501: NNGALQRTSD SKMASAFCAL YSVLHLL

Best Arabidopsis Sequence Match ( AT4G32285.2 )
(BLAST)

001: MALSMRKAIG VVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDQSSDKY IREILSLTSL SRGYVHACVT SVSRRLKKTR DWIVALKALM LVHRLLNEGD
101: PLFQEEILYA TRRGTRILNM SDFRDEAHSS SWDHSAFVRT YASYLDQRLE LALFERRGRN GGGSSSSHQS NGDDGYNRSR DDFRSPPPRT YDYETGNGFG
201: MPKRSRSFGD VNEIGAREEK KSVTPLREMT PERIFGKMGH LQRLLDRFLS CRPTGLAKNS RMILIAMYPV VKESFRLYAD ICEVLAVLLD KFFDMEYTDC
301: VKAFDAYASA AKQIDELIAF YHWCKDTGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRA KSPERKEIEA PPAPAPPVEE PVDMNEIKAL PPPENHTPPP
401: PPAPEPKPQQ PQVTDDLVNL REDDVSGDDQ GNKFALALFA GPPANNGKWE AFSSDNNVTS AWQNPAAELG KADWELALVE TASNLEHQKA AMGGGLDPLL
501: LNGMYDQGAV RQHVSTSELT GGSSSSVALP LPGKVNSHIL ALPAPDGTVQ KVNQDPFAAS LTIPPPSYVQ MAEMDKKQYL LTQEQQLWQQ YQQEGMRGQA
601: SLAKMNTAQT AMPYGMPPVN GMGPSPMGYY YNNPY

Arabidopsis Description

Probable clathrin assembly protein At4g32285 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.