Factsheet for Solyc06g011450.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040963	Potato	cytosol	96.58	92.51
Solyc08g059660.1.1	Tomato	cytosol	83.22	80.35
KRH52429	Soybean	endoplasmic reticulum	75.24	72.07
CDX76976	Canola	cytosol	68.4	70.83
CDY35361	Canola	cytosol	68.08	70.73
CDX68831	Canola	cytosol	66.94	69.54
CDX75232	Canola	cytosol	67.1	69.48
KRH61760	Soybean	mitochondrion	73.62	69.33
VIT_04s0008g05540.t01	Wine grape	cytosol	74.59	69.08
CDX76977	Canola	cytosol	58.14	68.39
CDX76760	Canola	cytosol	51.95	68.31
CDY11530	Canola	cytosol	64.5	68.28
Bra011333.1-P	Field mustard	cytosol	69.22	67.78
Zm00001d030399_P001	Maize	cytosol	38.6	67.71
AT4G32285.2	Thale cress	cytosol	69.38	67.09
AT2G25430.1	Thale cress	cytosol	71.01	66.77
Bra034252.1-P	Field mustard	cytosol	70.2	66.41
Bra007800.1-P	Field mustard	cytosol	65.8	65.91
KRH05593	Soybean	cytosol	9.12	65.12
Zm00001d046121_P001	Maize	cytosol	38.44	65.01
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	58.14	63.75
Zm00001d047804_P001	Maize	plasma membrane	63.52	61.51
EER92480	Sorghum	cytosol, mitochondrion, plastid	64.33	61.24
Zm00001d028620_P001	Maize	plasma membrane	63.52	61.03
Os03t0275500-01	Rice	plasma membrane	64.5	60.83
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	63.19	60.81
Solyc07g008060.1.1	Tomato	cytosol	60.42	60.42
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	62.7	60.34
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	51.79	60.34
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	62.87	59.75
GSMUA_Achr11P...	Banana	cytosol	41.21	55.48
Os05t0112101-01	Rice	plasma membrane	48.21	50.95
TraesCS1A01G035100.1	Wheat	cytosol	50.16	50.0
TraesCS1D01G036500.1	Wheat	cytosol	49.67	49.35
TraesCS1B01G044800.1	Wheat	cytosol	49.67	49.35
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	50.49	49.05
HORVU1Hr1G005290.1	Barley	cytosol	48.7	48.38
Zm00001d035652_P001	Maize	cytosol	44.3	45.56
EES18894	Sorghum	cytosol	45.93	45.26
Solyc11g044860.1.1	Tomato	cytosol	36.16	44.4
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	41.69	44.06
Solyc12g017440.1.1	Tomato	cytosol	16.29	33.44
Solyc07g007820.2.1	Tomato	cytosol	27.69	30.2
Solyc04g007860.2.1	Tomato	cytosol, plastid	27.04	29.48
Solyc02g043810.2.1	Tomato	cytosol	26.38	28.03
Solyc12g017430.1.1	Tomato	nucleus	9.28	26.89
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	16.78	24.88
Solyc12g006000.1.1	Tomato	cytosol	29.15	24.59
Solyc04g008350.1.1	Tomato	mitochondrion	14.82	23.16
Solyc07g049380.1.1	Tomato	cytosol	27.85	23.01
Solyc12g010530.1.1	Tomato	cytosol	22.15	22.9
Solyc01g005070.2.1	Tomato	mitochondrion	14.5	22.36

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.4.6	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	UniProt:K4C472	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF13	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:Solyc06g011450.1	EnsemblPlants:Solyc06g011450.1.1
UniParc:UPI0002767278	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:7405375..7407219

Molecular Weight (calculated)

67906.5 Da

IEP (calculated)

5.092

GRAVY (calculated)

-0.471

Length

614 amino acids

Sequence
(BLAST)

001: MAPELEVAIV KATSHDDEPA GEKYIREILQ LTSSSRGYVT ACMSAISKRL GKTRDWIVAL KCLMLIHRLL NDGDAVFQQE IMYATRRGTR LLNLSDFRDE
101: AHASSWDHSA FVRTYALYLD QRLELMVFER KQNGGQVERY GSKDEQWRLP QSSNRGYGYD HGDFRDEPGY GMRRSRSSGD VRESIQEKKD VTPMREMKPE
201: RIFGKMTHLQ RLLDRFLSCR PTGLAKNERM VLVALYPVVK ESYKIYTDIC DVLAVLLDKF FDMEYEDCVK AFDAYASAAK QIDELVGFYN WCKDIGVSRS
301: SEYPEVSRIT SKLLDTLEEF VRDRAKAMKS PERKVDSQPA PQGEEPTLDM NVIKALPPPE DYTAPPPPEL EPPKPKPVIQ ETRDLVDLRE EGVTADAQGN
401: KFALALFAGP GTSNANGSWE AFPSNGEPEI TSAWQNPAAE SGKADWELAL VETASNLSKQ KAALGGGLDP LLLNGMYDQG VVRQHVATAQ SSGGSASSVA
501: LPGVGKSATP VLALPAPDGT VQTVGQDPFA ASLSVPPPSY VQIADLQKKE QLLVQEQMVW QQYGRDGMQG QTSLAKITTG GYYGPGQPPV MPYGMPPVNG
601: VGMPPAAGYY YNPY

Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)

001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY

Arabidopsis Description

Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.