Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400025029 | Potato | nucleus | 90.09 | 67.25 |
| GSMUA_Achr7P04960_001 | Banana | cytosol | 44.34 | 17.09 |
| GSMUA_Achr4P20660_001 | Banana | cytosol | 44.81 | 17.06 |
| Solyc02g043810.2.1 | Tomato | cytosol | 45.75 | 16.78 |
| GSMUA_Achr3P05590_001 | Banana | cytosol | 42.45 | 16.48 |
| GSMUA_Achr1P15690_001 | Banana | cytosol | 41.98 | 15.92 |
| KXG20765 | Sorghum | mitochondrion | 42.45 | 15.85 |
| KXG20534 | Sorghum | cytosol, mitochondrion | 40.57 | 14.83 |
| EES06356 | Sorghum | cytosol | 39.62 | 14.74 |
| Zm00001d036672_P005 | Maize | cytosol | 39.62 | 14.61 |
| Solyc07g007820.2.1 | Tomato | cytosol | 38.68 | 14.56 |
| HORVU7Hr1G109970.5 | Barley | cytosol | 39.15 | 14.51 |
| TraesCS6D01G143700.1 | Wheat | cytosol | 40.09 | 14.48 |
| TraesCS7D01G414100.1 | Wheat | mitochondrion | 38.68 | 14.44 |
| TraesCS7A01G490500.2 | Wheat | cytosol | 38.68 | 14.29 |
| TraesCS7B01G393800.2 | Wheat | cytosol | 38.21 | 14.21 |
| TraesCS7A01G421900.1 | Wheat | mitochondrion | 38.21 | 14.21 |
| TraesCS7D01G476900.2 | Wheat | cytosol | 38.68 | 14.16 |
| Os02t0175700-01 | Rice | plasma membrane | 38.68 | 14.07 |
| HORVU6Hr1G030980.1 | Barley | cytosol | 41.04 | 14.05 |
| Zm00001d015430_P001 | Maize | cytosol | 38.21 | 14.04 |
| TraesCS6A01G154100.1 | Wheat | cytosol | 38.68 | 13.99 |
| TraesCS7B01G322300.1 | Wheat | mitochondrion | 37.26 | 13.98 |
| TraesCS6B01G181800.1 | Wheat | cytosol | 37.74 | 13.86 |
| Solyc04g007860.2.1 | Tomato | cytosol, plastid | 32.55 | 12.26 |
| TraesCS7B01G430700.2 | Wheat | cytosol | 7.08 | 10.49 |
| Solyc11g044860.1.1 | Tomato | cytosol | 23.11 | 9.8 |
| Solyc12g010530.1.1 | Tomato | cytosol | 26.42 | 9.43 |
| Solyc06g011450.1.1 | Tomato | cytosol | 26.89 | 9.28 |
| Solyc07g008060.1.1 | Tomato | cytosol | 25.94 | 8.96 |
| Solyc01g104870.2.1 | Tomato | cytosol, mitochondrion | 24.06 | 8.78 |
| Solyc08g059660.1.1 | Tomato | cytosol | 25.94 | 8.65 |
| HORVU7Hr1G097510.7 | Barley | mitochondrion | 18.87 | 7.83 |
| Os06t0699800-00 | Rice | cytosol | 9.43 | 4.56 |
| Solyc12g006000.1.1 | Tomato | cytosol | 14.15 | 4.12 |
| Solyc07g049380.1.1 | Tomato | cytosol | 11.79 | 3.36 |
| Solyc04g008350.1.1 | Tomato | mitochondrion | 5.19 | 2.8 |
| Solyc01g005070.2.1 | Tomato | mitochondrion | 3.3 | 1.76 |
| Solyc12g017440.1.1 | Tomato | cytosol | 1.89 | 1.34 |
| Solyc01g005170.1.1 | Tomato | cytosol, mitochondrion, plastid | 2.36 | 1.21 |
| Os06t0661400-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc12g017430.1.1 | EnsemblPlantsGene:Solyc12g017430.1 | ncoils:Coil | PANTHER:PTHR22951 | PANTHER:PTHR22951:SF32 | SEG:seg |
| UniParc:UPI000276940D | UniProt:K4DD76 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr12:-:6689517..6690374
Molecular Weight (calculated)
23898.9 Da
IEP (calculated)
5.129
GRAVY (calculated)
-0.914
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLNEVDPRV AELEESNALA LAIVPPGKGN LSTNNQVGET GKSSGWELAL VTEPSNNRSQ ITPDKELAGG FDKLLLDSLY QDDASRRQIQ LQQAGYSAGY
101: GYGYEIPGQS SVNHNDPFAM SNHIAPPTSV QMMAQQQQQY QMMQQQQQYQ MMQQQYMMQQ QQRPQQNMSM VHHQYQGQYS QQTWYMGSSN PFGDPFSHPQ
201: NNMPPRGNHP LI
101: GYGYEIPGQS SVNHNDPFAM SNHIAPPTSV QMMAQQQQQY QMMQQQQQYQ MMQQQYMMQQ QQRPQQNMSM VHHQYQGQYS QQTWYMGSSN PFGDPFSHPQ
201: NNMPPRGNHP LI
001: MATFNSFRKA VGAIKDSTTV SIAKVNSEFK DLDVAIVKAT NHVESAPKER HIRRIFSATS VVQPRADVAY CIHALAKRLS KTRNWVVAIK VLIVIHRTLR
101: EGDPTFREEL LNYSHRGHIL RISNFKDDTS PLAWDCSAWI RTYALFLEER LECYRVLKYD IEAERLPKGS GASSKNVDFN ASQTYRTRML SDEELLEQLP
201: ALQQLLYRLI GCQPEGSAYS NYLIQYALAL VLKESFKIYC AINDGIINLV DMFFEMSRHD AVKALNIYKR AGQQAENLAD FYEYCKGLEL ARNFQFPTLR
301: QPPPSFLATM EDYIKEAPQS GSVQKKLEYQ EKEEEEQEEE EAEHSVQPEE PAEADNQKEN SEGDQPLIEE EEEDQEKIEE EDAKPSFLID TDDLLGLNEI
401: NPKAAEIEDR NALALAIYPP GHEAPGPSNI LSLIETGGSG WELALVTPQN NNNNNNPRPA PNTKLAGGFD NLLLDSLYED DSARRQIQLT NAGYGHGGID
501: TTAAPPNPFQ MQQDPFAMSN NIAPPTNVQM AMQQQQQQQM TMMHQSPYNY THPHDYHQNH HHHQFSAGPS PSNPFGDAFL ALPPPPGSAG PQQNNHHHML
601: L
101: EGDPTFREEL LNYSHRGHIL RISNFKDDTS PLAWDCSAWI RTYALFLEER LECYRVLKYD IEAERLPKGS GASSKNVDFN ASQTYRTRML SDEELLEQLP
201: ALQQLLYRLI GCQPEGSAYS NYLIQYALAL VLKESFKIYC AINDGIINLV DMFFEMSRHD AVKALNIYKR AGQQAENLAD FYEYCKGLEL ARNFQFPTLR
301: QPPPSFLATM EDYIKEAPQS GSVQKKLEYQ EKEEEEQEEE EAEHSVQPEE PAEADNQKEN SEGDQPLIEE EEEDQEKIEE EDAKPSFLID TDDLLGLNEI
401: NPKAAEIEDR NALALAIYPP GHEAPGPSNI LSLIETGGSG WELALVTPQN NNNNNNPRPA PNTKLAGGFD NLLLDSLYED DSARRQIQLT NAGYGHGGID
501: TTAAPPNPFQ MQQDPFAMSN NIAPPTNVQM AMQQQQQQQM TMMHQSPYNY THPHDYHQNH HHHQFSAGPS PSNPFGDAFL ALPPPPGSAG PQQNNHHHML
601: L
Arabidopsis Description
Putative clathrin assembly protein At4g25940 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYT2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.