Factsheet for TraesCS6D01G143700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G181800.1	Wheat	cytosol	93.7	95.32
TraesCS6A01G154100.1	Wheat	cytosol	93.53	93.69
HORVU6Hr1G030980.1	Barley	cytosol	90.63	85.95
EES06356	Sorghum	cytosol	71.55	73.68
Os02t0175700-01	Rice	plasma membrane	72.06	72.56
Zm00001d015430_P001	Maize	cytosol	68.82	70.02
Solyc12g017440.1.1	Tomato	cytosol	34.92	68.56
CDY42239	Canola	cytosol	38.84	67.66
GSMUA_Achr7P04960_001	Banana	cytosol	59.97	64.0
GSMUA_Achr1P15690_001	Banana	cytosol	60.82	63.86
TraesCS7D01G476900.2	Wheat	cytosol	62.35	63.21
GSMUA_Achr4P20660_001	Banana	cytosol	59.28	62.48
Solyc02g043810.2.1	Tomato	cytosol	57.24	58.13
PGSC0003DMT400036570	Potato	cytosol	56.56	57.94
KRH02791	Soybean	cytosol	55.37	56.62
VIT_11s0103g00620.t01	Wine grape	cytosol	56.9	56.51
CDY52732	Canola	cytosol	55.54	55.73
CDY47927	Canola	cytosol	47.87	55.64
KRH19094	Soybean	cytosol	54.34	55.57
CDY38276	Canola	cytosol	55.71	55.24
TraesCS1D01G375800.1	Wheat	cytosol, mitochondrion, plastid	53.15	55.22
Bra002750.1-P	Field mustard	cytosol	55.54	54.97
KRH37330	Soybean	cytosol	55.71	54.87
Bra020460.1-P	Field mustard	cytosol	55.37	54.71
AT5G57200.1	Thale cress	cytosol	54.86	54.48
KRH12315	Soybean	cytosol	54.86	54.03
TraesCS3D01G259000.2	Wheat	cytosol	50.77	52.93
AT4G25940.1	Thale cress	cytosol	53.66	52.41
CDX89382	Canola	cytosol	53.15	51.91
CDX94400	Canola	cytosol	52.64	51.85
Bra013934.1-P	Field mustard	cytosol	52.98	51.75
TraesCS7D01G414100.1	Wheat	mitochondrion	49.23	50.88
TraesCS7D01G140200.1	Wheat	cytosol	44.29	46.1
TraesCS6D01G354100.2	Wheat	cytosol	41.23	40.88
Solyc12g017430.1.1	Tomato	nucleus	14.48	40.09
PGSC0003DMT400025029	Potato	nucleus	17.38	35.92
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	27.43	28.75
TraesCS1D01G036500.1	Wheat	cytosol	25.72	24.43
TraesCS1D01G266400.1	Wheat	mitochondrion	26.75	23.72
TraesCS4D01G085400.1	Wheat	mitochondrion	13.8	20.51
TraesCS5D01G304500.1	Wheat	mitochondrion	13.29	17.65

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF21
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:TraesCS6D01G143700	EnsemblPlants:TraesCS6D01G143700.1	TIGR:cd03564
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:114228928..114232897

Molecular Weight (calculated)

67216.7 Da

IEP (calculated)

5.843

GRAVY (calculated)

-0.507

Length

587 amino acids

Sequence
(BLAST)

001: MGSWRKAYGA LKDSTRVGLA KVHSDFKDLD IAIVKATNHV ECPPKERHVR KIFLATSMTR PRADVAYCIY ALSRRLSKTK NWTVALKTLI VIHRLLREGD
101: PTFKEEFLAH SHKRNLLHMA RFKDDSSPLA WDCSAWVRTY TLFLEERLEC FRNLKYDIET ERLMRSPQHS AKAHSRTRTL PCLDLMEHLP SLQQLLFRLM
201: GCQPEGLACS NYLIQYALAL ALEESFKIYC AINDGIINLV DMFFDMPRYD AIKALAIYKR ASMQVENLAD FYEFCKDLEL ARTFQFPTLR QPPPSFLAAM
301: EEYIREAPRP TIRRVDSEER KLLTYSQEAP TEPEKPAEEE KEEPTKLEQE PVPDPTPEPE QQLLAMETTG DLLNLDEEVN PFVVDLDEHN ALALAIVGPG
401: DGSKASTCQD LFSGSTSGWE LALVTAPSRY TSQPIETKLA GGFDIMLLDS LYEDGARRQQ IASVTYNGSL GQANNPFETN DPFAMSNSFA PPSNAQLAMV
501: TQQQQYFQAQ QHQQQYYYQP QLQYYQPQLQ QQQQYFQAQQ HQHQHQYFQQ HPQYCVHPTG TYNPFGDPFT DLVTLAAPSK QGNLSLL

Best Arabidopsis Sequence Match ( AT1G14910.1 )
(BLAST)

001: MGTLQSWRRA YGALKDTTKV GLVRVNSDYA ELDVAIVKAT NHVECPPKDR HLRKIFLATS AIRPRADVAY CIHALSRRLH KTRNWTVALK ALLVIHRLLR
101: DGDPTFREEL LNFSQKGRIM QISNFKDDSS PVAWDCSGWV RTYALFLEER LECFRVLKYD IEAERLPKVS PGQEKGYSKT RDLDGEKLLE QLPALQQLLH
201: RLIGCKPEGA AKHNHIIQYA LSLVLKESFK VYCAINEGII NLVEKFFEMP RHEAIKALEI YKRAGLQAGN LSAFYEVCKG LELARNFQFP VLREPPQSFL
301: TTMEEYMRDA PQMVDVTSGP LLLTYTPDDG LTSEDVGPSH EEHETSSPSD SAVVPSEETQ LSSQSPPSVE TPQNFIDTDD LLGLHDDTPD PLAILDQNAL
401: ALALVSNDVD SSPFSFGQAR DLDPSGWELA LVTTPSNDIS AATERQLAGG LDTLTLNSLY DDGALRAAQQ PAYGVPASNP FEVQDLFAFS DSVSPPSAVN
501: NPFGLYEPTY HQQEQQPQLQ VAPSPANPFG DFGEFPIVPV SEPQSTTSFG AFPVPVSEPS NTTGFGEIPV VPVTEPPNTT AFGEFPVVPV SEPQNITGFG
601: ALPVTPASEP SNTTGFGEFP VVSVSAPQNT TGFGALPVIP VSEPSKTTGL GEFPVVPVSE PQNTTGFGEF PVNAGAHEQH NSNNPFGSTG FL

Arabidopsis Description

Putative clathrin assembly protein At1g14910 [Source:UniProtKB/Swiss-Prot;Acc:P94017]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.