Factsheet for GSMUA_Achr7P04960_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P15690_001	Banana	cytosol	84.73	83.36
GSMUA_Achr4P20660_001	Banana	cytosol	82.0	80.97
Os06t0661400-01	Rice	cytosol	33.45	73.6
CDY42239	Canola	cytosol	44.91	73.29
Solyc12g017440.1.1	Tomato	cytosol	39.09	71.91
GSMUA_Achr3P05590_001	Banana	cytosol	63.82	64.29
EES06356	Sorghum	cytosol	65.09	62.81
Zm00001d036672_P005	Maize	cytosol	65.64	62.78
VIT_11s0103g00620.t01	Wine grape	cytosol	67.45	62.77
Os02t0175700-01	Rice	plasma membrane	66.18	62.44
KRH12315	Soybean	cytosol	67.09	61.91
KXG20534	Sorghum	cytosol, mitochondrion	65.27	61.9
GSMUA_Achr4P13420_001	Banana	cytosol	59.82	61.61
CDY47927	Canola	cytosol	56.55	61.58
PGSC0003DMT400036570	Potato	cytosol	64.0	61.43
HORVU7Hr1G109970.5	Barley	cytosol	63.82	61.36
CDY52732	Canola	cytosol	64.91	61.03
CDY38276	Canola	cytosol	65.64	60.98
Solyc02g043810.2.1	Tomato	cytosol	64.0	60.9
GSMUA_Achr9P21890_001	Banana	cytosol	62.0	60.89
Bra002750.1-P	Field mustard	cytosol	65.45	60.71
KRH02791	Soybean	cytosol	63.27	60.63
KRH37330	Soybean	cytosol	65.64	60.57
AT5G57200.1	Thale cress	cytosol	64.73	60.24
TraesCS6B01G181800.1	Wheat	cytosol	63.09	60.14
TraesCS6D01G143700.1	Wheat	cytosol	64.0	59.97
TraesCS7A01G490500.2	Wheat	cytosol	62.55	59.93
TraesCS7B01G393800.2	Wheat	cytosol	62.0	59.82
Zm00001d015430_P001	Maize	cytosol	62.73	59.79
TraesCS7D01G476900.2	Wheat	cytosol	62.91	59.76
KRH19094	Soybean	cytosol	62.36	59.76
Bra020460.1-P	Field mustard	cytosol	64.0	59.26
TraesCS6A01G154100.1	Wheat	cytosol	62.36	58.53
AT4G25940.1	Thale cress	cytosol	63.27	57.9
Bra013934.1-P	Field mustard	cytosol	62.55	57.24
CDX94400	Canola	cytosol	62.0	57.21
CDX89382	Canola	cytosol	62.36	57.07
HORVU6Hr1G030980.1	Barley	cytosol	63.45	56.38
GSMUA_Achr4P05920_001	Banana	cytosol	50.36	50.55
GSMUA_Achr6P03060_001	Banana	cytosol	49.45	49.73
GSMUA_Achr5P23570_001	Banana	cytosol	48.73	49.17
Solyc12g017430.1.1	Tomato	nucleus	17.09	44.34
PGSC0003DMT400025029	Potato	nucleus	20.18	39.08
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	32.91	34.09
GSMUA_Achr10P...	Banana	mitochondrion	29.27	31.88
GSMUA_Achr11P...	Banana	cytosol	29.82	31.54
GSMUA_Achr11P...	Banana	cytosol	24.36	29.39
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	28.0	29.22
GSMUA_Achr7P02300_001	Banana	plastid	22.18	24.16
GSMUA_Achr2P18700_001	Banana	cytosol	21.82	23.95
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	27.27	23.73
GSMUA_Achr7P18620_001	Banana	mitochondrion	14.18	20.1
GSMUA_Achr8P22890_001	Banana	mitochondrion	14.36	19.9
GSMUA_Achr7P02390_001	Banana	cytosol	14.36	18.99
GSMUA_Achr3P20230_001	Banana	mitochondrion	10.73	17.82

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSMUA_Achr7G04960_001
EnsemblPlants:GSMUA_Achr7P04960_001	EnsemblPlants:GSMUA_Achr7T04960_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0TET6
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI00029529B7	SEG:seg	:	:	:

Description

Putative clathrin assembly protein At5g57200 [Source:GMGC_GENE;Acc:GSMUA_Achr7G04960_001]

Coordinates

chr7:+:3724932..3731186

Molecular Weight (calculated)

61534.8 Da

IEP (calculated)

4.646

GRAVY (calculated)

-0.481

Length

550 amino acids

Sequence
(BLAST)

001: MGTWRKAYGA LKDSTKVGLA KVNSEFKDLD VAIVKATNHV ECPPKERHVR KIFAATAASR PRADVAYCIY ALGRRLSKTR NWTVALKTLI VMHRTLREGD
101: PTFREELLSY SRRGSVLQIS NFKDDSGPLA WDCSAWVRTY ALYLEERLEC FRILKYDIEA ERLMKSPQHS AKGHSRTRSL CCPDLLEQLP ALQQLLFRLI
201: GCQPEGAAFG NFLVQYALAL VLKESFKIYC AINDGIINLV DMFFEMSKYD AIKALEIYKR AGQQAEALSE FYEICKHLEL ARNFQFPTLR QPPTSFLATM
301: EEYIREAPGI GSISSKKLEY EEKNEPTEDQ EEAPPPETEK PEEDEKQPPE EEQPPEPEPI MEAEPQPATM GDLLGLDEIN PAAAELEESN ALALAIISPG
401: NDTKASTAHD LFGTDSSGWE LALVTTPSSN TSHLVESQLA GGFDRLLLES LYEDSSRRQQ IAAAYSGGGM DANPFDFGDP FAMSNSIAPP PSQQYYSPQQ
501: QQQQQQQMMM MMVPYQPPYP QQQISSANPF GDPFAGFPQG STPQGNQNLL

Best Arabidopsis Sequence Match ( AT5G57200.1 )
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Arabidopsis Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.