Factsheet for GSMUA_Achr5P23570_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P03060_001	Banana	cytosol	88.44	88.12
VIT_11s0016g05900.t01	Wine grape	cytosol	70.28	75.39
KRH20163	Soybean	cytosol	72.66	72.53
KRH03643	Soybean	mitochondrion	72.84	72.45
Zm00001d037484_P002	Maize	cytosol, mitochondrion	71.19	70.42
Solyc07g007820.2.1	Tomato	cytosol	71.93	69.63
CDY41768	Canola	cytosol, mitochondrion	50.64	69.35
KXG19435	Sorghum	cytosol, mitochondrion	71.74	69.33
CDY71126	Canola	cytosol, mitochondrion	54.13	69.25
Os06t0175500-01	Rice	plasma membrane	71.56	68.42
TraesCS7A01G138400.1	Wheat	cytosol	70.46	68.09
HORVU7Hr1G028590.1	Barley	cytosol	70.46	67.96
TraesCS7B01G040500.1	Wheat	cytosol	70.09	67.73
TraesCS7D01G140200.1	Wheat	cytosol	70.09	67.73
PGSC0003DMT400017184	Potato	cytosol	51.93	65.66
Zm00001d045154_P002	Maize	mitochondrion	70.83	64.55
CDY12401	Canola	cytosol, mitochondrion	63.67	64.26
AT5G35200.2	Thale cress	cytosol	64.04	64.15
Bra038937.1-P	Field mustard	mitochondrion	64.59	64.0
KXG31293	Sorghum	cytosol	64.4	63.82
Os02t0803300-01	Rice	cytosol	64.22	61.51
Zm00001d052008_P003	Maize	cytosol	60.18	59.31
GSMUA_Achr4P05920_001	Banana	cytosol	57.25	56.93
HORVU6Hr1G087330.4	Barley	cytosol	60.18	56.36
TraesCS6A01G370500.1	Wheat	cytosol	60.0	56.19
TraesCS6B01G407500.2	Wheat	cytosol	60.37	55.67
TraesCS6D01G354100.2	Wheat	cytosol	60.37	55.57
GSMUA_Achr4P13420_001	Banana	cytosol	50.83	51.87
GSMUA_Achr9P21890_001	Banana	cytosol	52.66	51.25
GSMUA_Achr7P04960_001	Banana	cytosol	49.17	48.73
GSMUA_Achr3P05590_001	Banana	cytosol	48.44	48.35
GSMUA_Achr1P15690_001	Banana	cytosol	49.36	48.12
GSMUA_Achr4P20660_001	Banana	cytosol	48.81	47.76
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	31.38	32.2
GSMUA_Achr10P...	Banana	mitochondrion	29.54	31.88
GSMUA_Achr11P...	Banana	cytosol	29.17	30.58
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	28.44	29.41
GSMUA_Achr11P...	Banana	cytosol	24.04	28.73
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	26.97	23.26
GSMUA_Achr2P18700_001	Banana	cytosol	20.73	22.55
GSMUA_Achr7P02300_001	Banana	plastid	20.55	22.18
GSMUA_Achr8P22890_001	Banana	mitochondrion	14.86	20.4
GSMUA_Achr7P02390_001	Banana	cytosol	15.23	19.95
GSMUA_Achr7P18620_001	Banana	mitochondrion	13.76	19.33
GSMUA_Achr3P20230_001	Banana	mitochondrion	10.09	16.62

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSMUA_Achr5G23570_001
EnsemblPlants:GSMUA_Achr5P23570_001	EnsemblPlants:GSMUA_Achr5T23570_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0T132
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF32	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI00029663A2	SEG:seg	:	:	:

Description

Putative clathrin assembly protein At5g35200 [Source:GMGC_GENE;Acc:GSMUA_Achr5G23570_001]

Coordinates

chr5:-:25271078..25280045

Molecular Weight (calculated)

60558.0 Da

IEP (calculated)

5.726

GRAVY (calculated)

-0.316

Length

545 amino acids

Sequence
(BLAST)

001: MSGGTQQSLR KYLGAIKDTT TVSLAKVNSD YKELDIAIVR ATNHVERPAK EKHIRAIFFA ISASRPRADV AYCIHALARR LAKTHNWAVA LKTLIVIHRA
101: LREVDPTFRE ELINYGKSRN HMLNLSHFKD DSSAYAWDYS AWVRTYALFL EERLECFRVL KYDVETDPPR TKNLETTELL EHLPSLQHLL HRLLGCQPQG
201: AACHNIIIHL ALSMVAGESI KIYNSISDGI TNMVDKFFEM QRHDAVRALD IYRRAGQQAE RLSEFYEVCK SMDIGRGETF IKIEQPPASF LTTMEDYVRD
301: APRSSTVGKD QARDEKDVSP KVVLAIEYKK TPEEEEAPPP PPPPPEPVKV ETLVSEVSEQ TDLLGLNDAN PDKSELDSKN AMALAIVPVD NVSSFATSSN
401: PENGTTGWEL ALVTAPSSNE TAVASSKLAG GLDKLTLDSL YDDAERIANQ NVTYNPWELA PMAAPMMQPM VHDPFYASNA IAAPHLVQMA AIAQQQQAFL
501: FQQQMIMAGQ QPHQAPVNPF ANPYADVPYA SGVPLQASNA YTGLI

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.