Factsheet for GSMUA_Achr4P20660_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P04960_001	Banana	cytosol	80.97	82.0
GSMUA_Achr1P15690_001	Banana	cytosol	77.92	77.64
Solyc12g017440.1.1	Tomato	cytosol	37.88	70.57
CDY42239	Canola	cytosol	42.55	70.33
Os06t0661400-01	Rice	cytosol	31.06	69.2
GSMUA_Achr3P05590_001	Banana	cytosol	61.94	63.19
EES06356	Sorghum	cytosol	63.55	62.11
VIT_11s0103g00620.t01	Wine grape	cytosol	65.17	61.42
Os02t0175700-01	Rice	plasma membrane	63.91	61.06
Zm00001d036672_P005	Maize	cytosol	62.48	60.52
KXG20534	Sorghum	cytosol, mitochondrion	62.84	60.34
Zm00001d015430_P001	Maize	cytosol	62.48	60.31
Solyc02g043810.2.1	Tomato	cytosol	62.12	59.86
KRH02791	Soybean	cytosol	61.58	59.76
PGSC0003DMT400036570	Potato	cytosol	61.4	59.69
TraesCS6B01G181800.1	Wheat	cytosol	61.76	59.62
GSMUA_Achr9P21890_001	Banana	cytosol	59.78	59.46
HORVU7Hr1G109970.5	Barley	cytosol	61.04	59.44
KRH12315	Soybean	cytosol	63.55	59.4
GSMUA_Achr4P13420_001	Banana	cytosol	56.91	59.36
TraesCS6D01G143700.1	Wheat	cytosol	62.48	59.28
KRH37330	Soybean	cytosol	63.38	59.23
KRH19094	Soybean	cytosol	60.86	59.06
TraesCS7D01G476900.2	Wheat	cytosol	60.68	58.38
CDY47927	Canola	cytosol	52.78	58.22
TraesCS6A01G154100.1	Wheat	cytosol	61.22	58.19
TraesCS7B01G393800.2	Wheat	cytosol	59.43	58.07
TraesCS7A01G490500.2	Wheat	cytosol	59.78	58.01
CDY52732	Canola	cytosol	60.68	57.78
CDY38276	Canola	cytosol	61.22	57.6
Bra002750.1-P	Field mustard	cytosol	61.04	57.34
AT5G57200.1	Thale cress	cytosol	60.14	56.68
HORVU6Hr1G030980.1	Barley	cytosol	62.48	56.22
Bra020460.1-P	Field mustard	cytosol	59.78	56.06
AT4G25940.1	Thale cress	cytosol	59.6	55.24
CDX89382	Canola	cytosol	58.53	54.24
Bra013934.1-P	Field mustard	cytosol	58.53	54.24
CDX94400	Canola	cytosol	57.81	54.03
GSMUA_Achr4P05920_001	Banana	cytosol	49.19	50.0
GSMUA_Achr6P03060_001	Banana	cytosol	48.65	49.54
GSMUA_Achr5P23570_001	Banana	cytosol	47.76	48.81
Solyc12g017430.1.1	Tomato	nucleus	17.06	44.81
PGSC0003DMT400025029	Potato	nucleus	20.29	39.79
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	31.96	33.52
GSMUA_Achr10P...	Banana	mitochondrion	28.73	31.68
GSMUA_Achr11P...	Banana	cytosol	28.9	30.96
GSMUA_Achr11P...	Banana	cytosol	24.24	29.61
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	27.83	29.41
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	28.01	24.68
GSMUA_Achr2P18700_001	Banana	cytosol	22.08	24.55
GSMUA_Achr7P02300_001	Banana	plastid	20.29	22.38
GSMUA_Achr7P18620_001	Banana	mitochondrion	13.64	19.59
GSMUA_Achr8P22890_001	Banana	mitochondrion	13.64	19.14
GSMUA_Achr7P02390_001	Banana	cytosol	13.82	18.51
GSMUA_Achr3P20230_001	Banana	mitochondrion	10.23	17.22

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSMUA_Achr4G20660_001
EnsemblPlants:GSMUA_Achr4P20660_001	EnsemblPlants:GSMUA_Achr4T20660_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0SQM9
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI0002953641	SEG:seg	:	:	:

Description

Putative clathrin assembly protein At4g25940 [Source:GMGC_GENE;Acc:GSMUA_Achr4G20660_001]

Coordinates

chr4:-:21215657..21222747

Molecular Weight (calculated)

62219.5 Da

IEP (calculated)

4.723

GRAVY (calculated)

-0.447

Length

557 amino acids

Sequence
(BLAST)

001: MGTWRKAYGA LKDSTMVGLA KVNSEFKELD VAIVKATNHV ECPPKERHVR RIFVATAATR PRADVTYCIY ALGRRLSKTR NWTVAVKTLI VIHRTLREGD
101: PTFQEELLSC SHRGSILQIS NFKDDLGSLA WDCSAWVRTY ALYLEERLKC FRILKYDIET ERQMKSPQES AKWHSRTRSL CCPDLLEQLP ALQQLMFRLI
201: GCQPEGAAFG NFLIQYALAL VLKESFKIYC AINDGIINLM DMFFEMPKCD AIKALEIYKR AGRQAEALSE FYEVCKHLEL ARRFRFPTLR QSPASFLATM
301: EEYIKEAPGI GSVSSKNLEY EDSNPPSYNQ DEAPSPENKK PDEEEEEQPP AGEQPPESEP VTEVESQPAT TGDLLGLNEI NPAAAELEEN NALALAIISP
401: GDNTNPSTTG DLLGTDSSGW ELALVTAPSS NTSHLVESKL AGGFDMLLLD SLYEDSARRQ QMASADSGGL DANPFDPFAM SNSIAPPPSV QMALMAQQQQ
501: QYYQQQLQQQ YCSPQQQQQF YQPQYPSPQQ MGSANPFGDL FVGFSPGATP QGNQYLH

Best Arabidopsis Sequence Match ( AT4G25940.1 )
(BLAST)

001: MATFNSFRKA VGAIKDSTTV SIAKVNSEFK DLDVAIVKAT NHVESAPKER HIRRIFSATS VVQPRADVAY CIHALAKRLS KTRNWVVAIK VLIVIHRTLR
101: EGDPTFREEL LNYSHRGHIL RISNFKDDTS PLAWDCSAWI RTYALFLEER LECYRVLKYD IEAERLPKGS GASSKNVDFN ASQTYRTRML SDEELLEQLP
201: ALQQLLYRLI GCQPEGSAYS NYLIQYALAL VLKESFKIYC AINDGIINLV DMFFEMSRHD AVKALNIYKR AGQQAENLAD FYEYCKGLEL ARNFQFPTLR
301: QPPPSFLATM EDYIKEAPQS GSVQKKLEYQ EKEEEEQEEE EAEHSVQPEE PAEADNQKEN SEGDQPLIEE EEEDQEKIEE EDAKPSFLID TDDLLGLNEI
401: NPKAAEIEDR NALALAIYPP GHEAPGPSNI LSLIETGGSG WELALVTPQN NNNNNNPRPA PNTKLAGGFD NLLLDSLYED DSARRQIQLT NAGYGHGGID
501: TTAAPPNPFQ MQQDPFAMSN NIAPPTNVQM AMQQQQQQQM TMMHQSPYNY THPHDYHQNH HHHQFSAGPS PSNPFGDAFL ALPPPPGSAG PQQNNHHHML
601: L

Arabidopsis Description

Putative clathrin assembly protein At4g25940 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.