CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38276	Canola	cytosol	99.49	98.31
Bra002750.1-P	Field mustard	cytosol	99.32	97.98
CDY42239	Canola	cytosol	52.65	91.39
AT5G57200.1	Thale cress	cytosol	91.28	90.36
CDY47927	Canola	cytosol	74.7	86.53
CDX94400	Canola	cytosol	81.54	80.03
CDX89382	Canola	cytosol	81.2	79.03
Os06t0661400-01	Rice	cytosol	29.74	69.6
KRH12315	Soybean	cytosol	67.18	65.94
KRH37330	Soybean	cytosol	66.84	65.6
VIT_11s0103g00620.t01	Wine grape	cytosol	65.81	65.14
GSMUA_Achr7P04960_001	Banana	cytosol	61.03	64.91
KRH19094	Soybean	cytosol	62.91	64.11
KRH02791	Soybean	cytosol	62.56	63.76
PGSC0003DMT400036570	Potato	cytosol	61.88	63.18
Solyc02g043810.2.1	Tomato	cytosol	62.05	62.8
GSMUA_Achr1P15690_001	Banana	cytosol	60.0	62.79
GSMUA_Achr4P20660_001	Banana	cytosol	57.78	60.68
GSMUA_Achr3P05590_001	Banana	cytosol	55.73	59.71
EES06356	Sorghum	cytosol	57.95	59.47
Zm00001d015430_P001	Maize	cytosol	56.24	57.02
KXG20534	Sorghum	cytosol, mitochondrion	56.07	56.55
Os02t0175700-01	Rice	plasma membrane	56.24	56.43
Zm00001d036672_P005	Maize	cytosol	55.38	56.35
Os06t0699800-00	Rice	cytosol	41.88	55.81
KXG20765	Sorghum	mitochondrion	54.02	55.63
TraesCS6B01G181800.1	Wheat	cytosol	54.87	55.63
TraesCS6D01G143700.1	Wheat	cytosol	55.73	55.54
CDY17660	Canola	cytosol	53.5	54.82
TraesCS7B01G393800.2	Wheat	cytosol	53.33	54.74
HORVU7Hr1G109970.5	Barley	cytosol	53.33	54.55
TraesCS6A01G154100.1	Wheat	cytosol	54.36	54.27
TraesCS7A01G490500.2	Wheat	cytosol	53.16	54.18
CDY36239	Canola	cytosol	52.82	54.12
TraesCS7D01G476900.2	Wheat	cytosol	53.5	54.06
TraesCS7A01G421900.1	Wheat	mitochondrion	52.31	53.68
TraesCS7D01G414100.1	Wheat	mitochondrion	51.97	53.52
TraesCS7B01G322300.1	Wheat	mitochondrion	51.62	53.45
CDY04095	Canola	cytosol	52.14	53.42
CDY41768	Canola	cytosol, mitochondrion	36.24	53.27
CDY48813	Canola	cytosol	52.82	53.0
CDY17459	Canola	cytosol	51.62	52.98
CDY09433	Canola	cytosol, mitochondrion	52.14	52.86
HORVU7Hr1G097510.7	Barley	mitochondrion	46.15	52.84
CDY71126	Canola	cytosol, mitochondrion	38.29	52.58
HORVU6Hr1G030980.1	Barley	cytosol	54.87	51.86
TraesCS7B01G430700.2	Wheat	cytosol	11.97	48.95
CDY12401	Canola	cytosol, mitochondrion	44.27	47.96
CDY45299	Canola	mitochondrion	51.45	43.75
CDY53525	Canola	cytosol, mitochondrion	51.45	43.19
CDX76976	Canola	cytosol	30.26	29.85
CDY35361	Canola	cytosol	30.09	29.78
CDY11530	Canola	cytosol	29.4	29.66
CDX68831	Canola	cytosol	29.57	29.27
CDX75232	Canola	cytosol	29.57	29.17
CDY15448	Canola	mitochondrion	27.35	27.97
CDY32494	Canola	mitochondrion	27.18	27.8
CDY21904	Canola	mitochondrion	27.86	27.21
CDY22070	Canola	mitochondrion	27.86	27.08
CDY64692	Canola	mitochondrion	16.41	25.33
CDY03862	Canola	mitochondrion	16.41	25.2
CDY12691	Canola	mitochondrion	15.56	25.0
CDX81471	Canola	mitochondrion	15.56	24.73
CDY01884	Canola	mitochondrion	15.04	24.65
CDX96047	Canola	mitochondrion	14.87	24.1
CDX89917	Canola	cytosol	19.32	24.09
CDY18145	Canola	cytosol	19.15	24.03
CDY50184	Canola	mitochondrion	15.04	23.91
CDY60368	Canola	mitochondrion	15.38	23.81
CDY57160	Canola	mitochondrion	15.21	23.55
CDY18283	Canola	cytosol, nucleus, peroxisome	19.32	23.54
CDX93766	Canola	mitochondrion	14.87	23.45
CDY45281	Canola	cytosol	13.33	22.74
CDX76760	Canola	cytosol	18.12	22.7
CDX76977	Canola	cytosol	20.17	22.61
CDY41097	Canola	cytosol	12.99	22.09
CDY53396	Canola	cytosol	20.85	20.5
CDY15531	Canola	cytosol, golgi, nucleus	21.37	20.49
CDX86594	Canola	cytosol, golgi, nucleus	21.2	19.08
CDY37444	Canola	nucleus	8.89	18.51
CDX86691	Canola	cytosol, mitochondrion	29.06	16.82

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	GO:A0A078IRX5	UniProt:A0A078IRX5	InterPro:ANTH_dom
EnsemblPlants:CDY52732	ProteinID:CDY52732	ProteinID:CDY52732.1	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSBRNA2T00007674001	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0004EDDCC7	SEG:seg	:

Description

BnaC09g53320DBnaC09g53320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRX5]

Coordinates

chrLK033123:-:20225..23220

Molecular Weight (calculated)

65789.3 Da

IEP (calculated)

4.788

GRAVY (calculated)

-0.608

Length

585 amino acids

Sequence
(BLAST)

001: MGTFTSLRKA YGALKDSTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS AIQPRADVAY CIHALSKRLS KTRTWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKGA GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMTR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE KEEEPEPQEE EQPEEPAEDE NQNTETDQPL IEEEEEEPIE EKEQEEVKPS PLIDTDDLLG LNEINPQAAE IEERNALALA
401: IYPPGHETSG PSNSLSLIEA GGSGWELALV TPQNNNNNNN PRPTVATKLG GGFDNLLLDS LYEDDTARRQ IQLTNAGYGF GATATHGEPH SSNPNPFGMQ
501: QDPFAMSSNM APPTNVQMAM QQQQMMMMNN NQNPYNNNNY SPYHQHFSSY PSSSASANPF GDTFLALPAP PSSSNQQQHN NHMLL

Best Arabidopsis Sequence Match ( AT5G57200.1 )
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Arabidopsis Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.