CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71211
CDX92339
CDY26951
CDY48221

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05020.1	CDX71211	AT2G15270.1	21798944
AT1G05020.1	CDY48221	AT2G15270.1	21798944
AT1G05020.1	CDX92339	AT5G22780.1	15054111
AT1G05020.1	CDY26951	AT5G22780.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53396	Canola	cytosol	96.88	78.15
Bra015381.1-P	Field mustard	cytosol	94.58	71.27
CDY15531	Canola	cytosol, golgi, nucleus	78.96	62.13
AT1G05020.1	Thale cress	cytosol	83.12	61.1
CDX86594	Canola	cytosol, golgi, nucleus	78.96	58.31
VIT_12s0059g01330.t01	Wine grape	cytosol	56.46	45.85
PGSC0003DMT400036091	Potato	cytosol	57.92	38.29
Solyc12g006000.1.1	Tomato	cytosol	57.92	38.19
Solyc07g049380.1.1	Tomato	cytosol	54.79	35.4
PGSC0003DMT400001773	Potato	nucleus	54.38	34.66
GSMUA_Achr2P18700_001	Banana	cytosol	36.04	34.53
KRH17907	Soybean	cytosol	51.04	33.56
GSMUA_Achr7P02300_001	Banana	plastid	35.0	33.27
CDY42239	Canola	cytosol	21.04	29.97
CDY11530	Canola	cytosol	33.12	27.41
CDY41768	Canola	cytosol, mitochondrion	22.71	27.39
CDX76976	Canola	cytosol	33.33	26.98
CDY35361	Canola	cytosol	33.12	26.9
CDX75232	Canola	cytosol	33.12	26.81
CDX68831	Canola	cytosol	32.92	26.73
CDY71126	Canola	cytosol, mitochondrion	23.33	26.29
CDY15448	Canola	mitochondrion	29.79	25.0
CDY21904	Canola	mitochondrion	30.62	24.54
CDY22070	Canola	mitochondrion	30.42	24.25
CDY32494	Canola	mitochondrion	28.12	23.6
CDY47927	Canola	cytosol	24.17	22.97
CDY64692	Canola	mitochondrion	16.67	21.11
CDY45281	Canola	cytosol	15.0	20.99
CDX76760	Canola	cytosol	20.42	20.98
CDY36239	Canola	cytosol	24.58	20.67
CDY17660	Canola	cytosol	24.58	20.67
CDY09433	Canola	cytosol, mitochondrion	24.79	20.62
CDY12401	Canola	cytosol, mitochondrion	23.12	20.56
CDY03862	Canola	mitochondrion	16.25	20.47
CDX81471	Canola	mitochondrion	15.62	20.38
CDY60368	Canola	mitochondrion	16.04	20.37
CDY57160	Canola	mitochondrion	16.04	20.37
CDY41097	Canola	cytosol	14.58	20.35
CDY12691	Canola	mitochondrion	15.42	20.33
CDY48813	Canola	cytosol	24.58	20.24
CDY17459	Canola	cytosol	23.96	20.18
CDX76977	Canola	cytosol	21.67	19.92
CDY04095	Canola	cytosol	23.54	19.79
CDY01884	Canola	mitochondrion	14.58	19.61
CDX89917	Canola	cytosol	18.96	19.4
CDX96047	Canola	mitochondrion	14.58	19.39
CDY52732	Canola	cytosol	23.54	19.32
CDY18145	Canola	cytosol	18.75	19.31
CDY38276	Canola	cytosol	23.54	19.09
CDY50184	Canola	mitochondrion	14.58	19.02
CDX93766	Canola	mitochondrion	14.58	18.87
CDX89382	Canola	cytosol	23.12	18.47
CDX94400	Canola	cytosol	22.92	18.46
CDY53525	Canola	cytosol, mitochondrion	22.92	15.78
CDY45299	Canola	mitochondrion	22.5	15.7
CDX86691	Canola	cytosol, mitochondrion	29.17	13.85
CDY37444	Canola	nucleus	2.92	4.98

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.1	GO:A0A078G0Y1	UniProt:A0A078G0Y1	InterPro:ANTH_dom
EnsemblPlants:CDY18283	ProteinID:CDY18283	ProteinID:CDY18283.1	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSBRNA2T00002818001	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF26
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0004EE4F88	SEG:seg	:

Description

BnaC05g03060DBnaC05g03060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0Y1]

Coordinates

chrLK032083:-:670893..672394

Molecular Weight (calculated)

53502.5 Da

IEP (calculated)

8.240

GRAVY (calculated)

-0.445

Length

480 amino acids

Sequence
(BLAST)

001: MPSKLKKAIG AVKDHTSISL AKVATGANGG GDLTTLEVAI LKTTSHDEDV PIYDRLVSDI LAIISSKKSH AAACAAAIGR RIGRTKNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSTFR DDSNSCPWDY TAFVRTFALY LDERLDCFLT GKLQRRYTNR DQTGRITTSK SRFSPKLNEP AVRDMKPVML
201: LDKITHWQRL LDRAIATRPT GDAKANKLVK MSLYAVAQES FDLYRDISDG LALLLDSFFH LQYQSCMHAF QACLRASKQF DELNGFYDLC KSIGVGRTSE
301: YPSVQKISLE LLETLREFLK DQSSFPPPPN SLLPPTQPQA TVLSSPEASE RYWDCGGSFR STSLEDLMSR TDAGTSSPPM SCQSEPYGGG RDDLNGNSFD
401: TVSTKSLPNN PSVSAKEKKK EEDAKVEEAF DPWEALMLRD DPRKNVETIT TSEDQRDSGN CTIRELVACA RRNSYASARY

Best Arabidopsis Sequence Match ( AT1G05020.1 )
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS

Arabidopsis Description

AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.