Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G05020.1 | CDX71211 | AT2G15270.1 | 21798944 |
| AT1G05020.1 | CDY48221 | AT2G15270.1 | 21798944 |
| AT1G05020.1 | CDX92339 | AT5G22780.1 | 15054111 |
| AT1G05020.1 | CDY26951 | AT5G22780.1 | 15054111 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18283 | Canola | cytosol, nucleus, peroxisome | 78.15 | 96.88 |
| Bra015381.1-P | Field mustard | cytosol | 96.47 | 90.11 |
| AT1G05020.1 | Thale cress | cytosol | 81.68 | 74.43 |
| CDY15531 | Canola | cytosol, golgi, nucleus | 76.13 | 74.26 |
| CDX86594 | Canola | cytosol, golgi, nucleus | 74.29 | 68.0 |
| VIT_12s0059g01330.t01 | Wine grape | cytosol | 51.6 | 51.95 |
| PGSC0003DMT400036091 | Potato | cytosol | 53.78 | 44.08 |
| Solyc12g006000.1.1 | Tomato | cytosol | 53.78 | 43.96 |
| Solyc07g049380.1.1 | Tomato | cytosol | 51.43 | 41.18 |
| PGSC0003DMT400001773 | Potato | nucleus | 50.92 | 40.24 |
| GSMUA_Achr2P18700_001 | Banana | cytosol | 33.11 | 39.32 |
| KRH17907 | Soybean | cytosol | 48.24 | 39.32 |
| GSMUA_Achr7P02300_001 | Banana | plastid | 30.42 | 35.84 |
| CDY11530 | Canola | cytosol | 30.08 | 30.86 |
| CDX76976 | Canola | cytosol | 30.25 | 30.35 |
| CDY35361 | Canola | cytosol | 30.08 | 30.29 |
| CDX75232 | Canola | cytosol | 30.08 | 30.19 |
| CDX68831 | Canola | cytosol | 29.92 | 30.12 |
| CDY42239 | Canola | cytosol | 16.97 | 29.97 |
| CDY41768 | Canola | cytosol, mitochondrion | 18.32 | 27.39 |
| CDY15448 | Canola | mitochondrion | 26.05 | 27.1 |
| CDY21904 | Canola | mitochondrion | 26.89 | 26.71 |
| CDY71126 | Canola | cytosol, mitochondrion | 18.82 | 26.29 |
| CDY22070 | Canola | mitochondrion | 26.55 | 26.25 |
| CDY32494 | Canola | mitochondrion | 25.21 | 26.22 |
| CDX76760 | Canola | cytosol | 19.83 | 25.27 |
| CDX76977 | Canola | cytosol | 20.84 | 23.75 |
| CDY47927 | Canola | cytosol | 19.5 | 22.97 |
| CDX89917 | Canola | cytosol | 17.65 | 22.39 |
| CDY18145 | Canola | cytosol | 17.48 | 22.32 |
| CDY17660 | Canola | cytosol | 21.34 | 22.24 |
| CDY64692 | Canola | mitochondrion | 14.12 | 22.16 |
| CDY36239 | Canola | cytosol | 21.18 | 22.07 |
| CDY09433 | Canola | cytosol, mitochondrion | 21.18 | 21.84 |
| CDY12401 | Canola | cytosol, mitochondrion | 19.66 | 21.67 |
| CDY03862 | Canola | mitochondrion | 13.78 | 21.52 |
| CDY48813 | Canola | cytosol | 21.01 | 21.44 |
| CDY57160 | Canola | mitochondrion | 13.61 | 21.43 |
| CDY60368 | Canola | mitochondrion | 13.61 | 21.43 |
| CDY17459 | Canola | cytosol | 20.5 | 21.4 |
| CDY45281 | Canola | cytosol | 12.27 | 21.28 |
| CDY04095 | Canola | cytosol | 20.34 | 21.19 |
| CDX81471 | Canola | mitochondrion | 12.94 | 20.92 |
| CDY12691 | Canola | mitochondrion | 12.77 | 20.88 |
| CDY52732 | Canola | cytosol | 20.5 | 20.85 |
| CDY41097 | Canola | cytosol | 11.93 | 20.64 |
| CDY38276 | Canola | cytosol | 20.5 | 20.61 |
| CDY01884 | Canola | mitochondrion | 12.27 | 20.45 |
| CDX89382 | Canola | cytosol | 20.34 | 20.13 |
| CDX94400 | Canola | cytosol | 20.0 | 19.97 |
| CDX96047 | Canola | mitochondrion | 12.1 | 19.94 |
| CDX93766 | Canola | mitochondrion | 12.1 | 19.41 |
| CDY50184 | Canola | mitochondrion | 11.93 | 19.29 |
| CDY53525 | Canola | cytosol, mitochondrion | 19.66 | 16.79 |
| CDY45299 | Canola | mitochondrion | 19.16 | 16.57 |
| CDX86691 | Canola | cytosol, mitochondrion | 25.88 | 15.23 |
| CDY37444 | Canola | nucleus | 4.71 | 9.96 |
Protein Annotations
| Gene3D:1.20.58.150 | Gene3D:1.25.40.90 | MapMan:22.1.6.1 | GO:A0A078IU65 | UniProt:A0A078IU65 | InterPro:ANTH_dom |
| EnsemblPlants:CDY53396 | ProteinID:CDY53396 | ProteinID:CDY53396.1 | InterPro:Clathrin_AP_dom2 | InterPro:ENTH | InterPro:ENTH_VHS |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005543 | GO:GO:0005545 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008289 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0030136 | GO:GO:0030276 | GO:GO:0048268 | EnsemblPlantsGene:GSBRNA2T00010617001 | InterPro:IPR008942 |
| InterPro:IPR013809 | InterPro:IPR014712 | PFAM:PF07651 | PFscan:PS50942 | PANTHER:PTHR22951 | PANTHER:PTHR22951:SF26 |
| SMART:SM00273 | SUPFAM:SSF48464 | SUPFAM:SSF89009 | UniParc:UPI0004EF0FA8 | SEG:seg | : |
Description
BnaAnng12440DBnaAnng12440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IU65]
Coordinates
chrLK033196:+:40640..42553
Molecular Weight (calculated)
66118.0 Da
IEP (calculated)
5.599
GRAVY (calculated)
-0.450
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSKLKKAIG AVKDHTSISL AKVATGANGG GDLTTLEVAI LKTTSHDEDV PIYDRLVSDI LGIISSKKSH AAACAAAIGR RIGRTKNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSTFR DDSNSCPWDY TAFVRTFALY LDERLDCFLT GKLQRRYTNR DQTGRITTSK SRFSPKLNEP AVRDMKPVML
201: LDKITHWQRL LDRAIATRPT GDAKANKLVK MSLYAVTQES FDLYRDISDG LALLLDSFFH LQYQSCMHAF QACLRASKQF DELNGFYDLC KSIGVGRTSE
301: YPSVQKISLE LLETLREFLK DQSSFPPPPN SLPPQPQATV SRSPEASERY WDCGGSFRST SLEDLMSRTD AGTSSPPMSC QSEPYGGGRD DLNGNNFDTV
401: STKSLPNNPS VSAKEKKKEE DAKVEEAFDP WEALMLRDDP RKNVESIATS EDQRDSGNCT VRELVACAGR NSYATTTDQY NPFLEDTATA PLAAESDFQP
501: LAGELMTTFN ALAVTEFQPQ PTFQVNFPED FEPSSTPTFK AIGSLPEKCD PFATFESFGF GETVSENGGV NQQSVLQEQQ LWLQNQNKIM AKHLI
101: IFQDGDPYFP REVLHAMKRG AKILNLSTFR DDSNSCPWDY TAFVRTFALY LDERLDCFLT GKLQRRYTNR DQTGRITTSK SRFSPKLNEP AVRDMKPVML
201: LDKITHWQRL LDRAIATRPT GDAKANKLVK MSLYAVTQES FDLYRDISDG LALLLDSFFH LQYQSCMHAF QACLRASKQF DELNGFYDLC KSIGVGRTSE
301: YPSVQKISLE LLETLREFLK DQSSFPPPPN SLPPQPQATV SRSPEASERY WDCGGSFRST SLEDLMSRTD AGTSSPPMSC QSEPYGGGRD DLNGNNFDTV
401: STKSLPNNPS VSAKEKKKEE DAKVEEAFDP WEALMLRDDP RKNVESIATS EDQRDSGNCT VRELVACAGR NSYATTTDQY NPFLEDTATA PLAAESDFQP
501: LAGELMTTFN ALAVTEFQPQ PTFQVNFPED FEPSSTPTFK AIGSLPEKCD PFATFESFGF GETVSENGGV NQQSVLQEQQ LWLQNQNKIM AKHLI
001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS
Arabidopsis Description
AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.