CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52732	Canola	cytosol	98.31	99.49
Bra002750.1-P	Field mustard	cytosol	99.49	99.33
CDY42239	Canola	cytosol	51.86	91.1
AT5G57200.1	Thale cress	cytosol	90.71	90.86
CDY47927	Canola	cytosol	74.66	87.52
CDX94400	Canola	cytosol	81.08	80.54
CDX89382	Canola	cytosol	80.74	79.53
Os06t0661400-01	Rice	cytosol	29.39	69.6
KRH12315	Soybean	cytosol	66.89	66.44
KRH37330	Soybean	cytosol	66.55	66.11
GSMUA_Achr7P04960_001	Banana	cytosol	60.98	65.64
VIT_11s0103g00620.t01	Wine grape	cytosol	65.37	65.48
KRH19094	Soybean	cytosol	62.84	64.81
KRH02791	Soybean	cytosol	62.5	64.46
PGSC0003DMT400036570	Potato	cytosol	61.82	63.87
Solyc02g043810.2.1	Tomato	cytosol	61.99	63.49
GSMUA_Achr1P15690_001	Banana	cytosol	59.46	62.97
GSMUA_Achr4P20660_001	Banana	cytosol	57.6	61.22
GSMUA_Achr3P05590_001	Banana	cytosol	55.41	60.07
EES06356	Sorghum	cytosol	57.6	59.82
Zm00001d015430_P001	Maize	cytosol	55.91	57.37
Os02t0175700-01	Rice	plasma membrane	56.25	57.12
KXG20534	Sorghum	cytosol, mitochondrion	55.57	56.72
Zm00001d036672_P005	Maize	cytosol	54.9	56.52
Os06t0699800-00	Rice	cytosol	41.72	56.26
KXG20765	Sorghum	mitochondrion	53.72	55.99
TraesCS6D01G143700.1	Wheat	cytosol	55.24	55.71
TraesCS6B01G181800.1	Wheat	cytosol	54.22	55.63
TraesCS7B01G393800.2	Wheat	cytosol	53.21	55.26
CDY17660	Canola	cytosol	53.21	55.17
HORVU7Hr1G109970.5	Barley	cytosol	53.04	54.9
TraesCS7A01G490500.2	Wheat	cytosol	53.04	54.7
TraesCS7D01G476900.2	Wheat	cytosol	53.38	54.58
CDY36239	Canola	cytosol	52.53	54.47
TraesCS6A01G154100.1	Wheat	cytosol	53.89	54.44
TraesCS7A01G421900.1	Wheat	mitochondrion	52.03	54.04
TraesCS7D01G414100.1	Wheat	mitochondrion	51.69	53.87
TraesCS7B01G322300.1	Wheat	mitochondrion	51.35	53.81
CDY41768	Canola	cytosol, mitochondrion	36.15	53.77
CDY04095	Canola	cytosol	51.52	53.42
HORVU7Hr1G097510.7	Barley	mitochondrion	45.95	53.23
CDY48813	Canola	cytosol	52.36	53.17
CDY71126	Canola	cytosol, mitochondrion	38.18	53.05
CDY09433	Canola	cytosol, mitochondrion	51.69	53.03
CDY17459	Canola	cytosol	51.01	52.98
HORVU6Hr1G030980.1	Barley	cytosol	54.05	51.7
TraesCS7B01G430700.2	Wheat	cytosol	11.82	48.95
CDY12401	Canola	cytosol, mitochondrion	44.43	48.7
CDY45299	Canola	mitochondrion	51.18	44.04
CDY53525	Canola	cytosol, mitochondrion	51.01	43.33
CDX76976	Canola	cytosol	29.9	29.85
CDY35361	Canola	cytosol	29.73	29.78
CDY11530	Canola	cytosol	29.05	29.66
CDX68831	Canola	cytosol	29.22	29.27
CDX75232	Canola	cytosol	29.22	29.17
CDY15448	Canola	mitochondrion	27.2	28.15
CDY32494	Canola	mitochondrion	27.03	27.97
CDY21904	Canola	mitochondrion	27.7	27.38
CDY22070	Canola	mitochondrion	27.7	27.24
CDY64692	Canola	mitochondrion	16.22	25.33
CDY03862	Canola	mitochondrion	16.22	25.2
CDY12691	Canola	mitochondrion	15.37	25.0
CDX81471	Canola	mitochondrion	15.37	24.73
CDY01884	Canola	mitochondrion	14.86	24.65
CDX89917	Canola	cytosol	19.26	24.31
CDY18145	Canola	cytosol	19.09	24.25
CDX96047	Canola	mitochondrion	14.7	24.1
CDY50184	Canola	mitochondrion	14.86	23.91
CDY60368	Canola	mitochondrion	15.2	23.81
CDY57160	Canola	mitochondrion	15.03	23.55
CDY18283	Canola	cytosol, nucleus, peroxisome	19.09	23.54
CDX93766	Canola	mitochondrion	14.7	23.45
CDY45281	Canola	cytosol	13.18	22.74
CDX76760	Canola	cytosol	17.91	22.7
CDX76977	Canola	cytosol	19.93	22.61
CDY41097	Canola	cytosol	12.84	22.09
CDY53396	Canola	cytosol	20.61	20.5
CDY15531	Canola	cytosol, golgi, nucleus	21.11	20.49
CDX86594	Canola	cytosol, golgi, nucleus	20.95	19.08
CDY37444	Canola	nucleus	8.95	18.86
CDX86691	Canola	cytosol, mitochondrion	28.72	16.82

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	GO:A0A078HKU0	UniProt:A0A078HKU0	InterPro:ANTH_dom
EnsemblPlants:CDY38276	ProteinID:CDY38276	ProteinID:CDY38276.1	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSBRNA2T00065635001	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0004EEA550	SEG:seg	:

Description

BnaA10g11240DBnaA10g11240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKU0]

Coordinates

chrLK032420:+:186330..189266

Molecular Weight (calculated)

66716.2 Da

IEP (calculated)

4.731

GRAVY (calculated)

-0.634

Length

592 amino acids

Sequence
(BLAST)

001: MGTFTSLRKA YGALKDSTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS AIQPRADVAY CIHALSKRLS KTRTWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKGA GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMTR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YEEKEEEPEP QEEEQPEEPA EDENQNTETD QPLIEEEEEE PIEEKEEEEV KPSPLIDTDD LLGLNEINPQ AAEIEERNAL
401: ALAIYPPGHE TSGPSNSLSL IEAGGSGWEL ALVTPQNNNN NNNPRPTVAT KLGGGFDNLL LDSLYEDDTA RRQIQLTNAG YGFGATATHG EPHSSNPNPF
501: GMQQDPFAMS SNMAPPTNVQ MAMQQQQMMM MNNNQNPYNN NNNYSPYHQQ HQHFPSYPSS SASANPFGDT FLALPAPPSS STQQQHNNHM LL

Best Arabidopsis Sequence Match ( AT5G57200.1 )
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Arabidopsis Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.