Factsheet for GSMUA_Achr1P15690_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P04960_001	Banana	cytosol	83.36	84.73
GSMUA_Achr4P20660_001	Banana	cytosol	77.64	77.92
CDY42239	Canola	cytosol	44.01	73.0
Os06t0661400-01	Rice	cytosol	32.38	72.4
Solyc12g017440.1.1	Tomato	cytosol	38.1	71.24
GSMUA_Achr3P05590_001	Banana	cytosol	62.61	64.1
EES06356	Sorghum	cytosol	64.58	63.33
VIT_11s0103g00620.t01	Wine grape	cytosol	66.55	62.94
Zm00001d015430_P001	Maize	cytosol	63.51	61.53
TraesCS6B01G181800.1	Wheat	cytosol	63.33	61.35
PGSC0003DMT400036570	Potato	cytosol	62.79	61.26
Solyc02g043810.2.1	Tomato	cytosol	63.15	61.07
Zm00001d036672_P005	Maize	cytosol	62.79	61.04
HORVU7Hr1G109970.5	Barley	cytosol	62.43	61.01
Os02t0175700-01	Rice	plasma membrane	63.51	60.89
TraesCS6D01G143700.1	Wheat	cytosol	63.86	60.82
GSMUA_Achr4P13420_001	Banana	cytosol	57.96	60.67
KRH02791	Soybean	cytosol	62.25	60.63
KXG20534	Sorghum	cytosol, mitochondrion	62.61	60.34
CDY52732	Canola	cytosol	62.79	60.0
KRH12315	Soybean	cytosol	63.86	59.9
GSMUA_Achr9P21890_001	Banana	cytosol	59.93	59.82
KRH19094	Soybean	cytosol	61.36	59.76
KRH37330	Soybean	cytosol	63.69	59.73
CDY47927	Canola	cytosol	53.85	59.6
TraesCS7D01G476900.2	Wheat	cytosol	61.72	59.59
TraesCS7B01G393800.2	Wheat	cytosol	60.64	59.47
CDY38276	Canola	cytosol	62.97	59.46
TraesCS7A01G490500.2	Wheat	cytosol	61.0	59.41
AT5G57200.1	Thale cress	cytosol	62.79	59.39
TraesCS6A01G154100.1	Wheat	cytosol	62.08	59.22
Bra002750.1-P	Field mustard	cytosol	62.79	59.19
Bra020460.1-P	Field mustard	cytosol	61.72	58.08
HORVU6Hr1G030980.1	Barley	cytosol	63.51	57.35
AT4G25940.1	Thale cress	cytosol	61.0	56.74
CDX94400	Canola	cytosol	59.75	56.04
Bra013934.1-P	Field mustard	cytosol	60.11	55.91
CDX89382	Canola	cytosol	60.11	55.91
GSMUA_Achr6P03060_001	Banana	cytosol	49.55	50.64
GSMUA_Achr4P05920_001	Banana	cytosol	48.84	49.82
GSMUA_Achr5P23570_001	Banana	cytosol	48.12	49.36
Solyc12g017430.1.1	Tomato	nucleus	15.92	41.98
PGSC0003DMT400025029	Potato	nucleus	19.68	38.73
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	31.66	33.33
GSMUA_Achr10P...	Banana	mitochondrion	28.98	32.08
GSMUA_Achr11P...	Banana	cytosol	29.52	31.73
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	28.8	30.55
GSMUA_Achr11P...	Banana	cytosol	24.51	30.04
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	27.55	24.37
GSMUA_Achr2P18700_001	Banana	cytosol	21.82	24.35
GSMUA_Achr7P02300_001	Banana	plastid	20.93	23.17
GSMUA_Achr8P22890_001	Banana	mitochondrion	14.13	19.9
GSMUA_Achr7P18620_001	Banana	mitochondrion	13.42	19.33
GSMUA_Achr7P02390_001	Banana	cytosol	14.13	18.99
GSMUA_Achr3P20230_001	Banana	mitochondrion	10.73	18.13

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSMUA_Achr1G15690_001
EnsemblPlants:GSMUA_Achr1P15690_001	EnsemblPlants:GSMUA_Achr1T15690_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0S077
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI000295B1AF	SEG:seg	:	:	:

Description

Putative clathrin assembly protein At5g57200 [Source:GMGC_GENE;Acc:GSMUA_Achr1G15690_001]

Coordinates

chr1:+:11773042..11779146

Molecular Weight (calculated)

62221.4 Da

IEP (calculated)

4.480

GRAVY (calculated)

-0.433

Length

559 amino acids

Sequence
(BLAST)

001: MGTWRKAYGA LKDSTKVGLA KVNSEFKDLD IAIVKATNHE ECPPKERHVR TIFAATSVVR PRADVAYCIY ALGRRLSKTH NWMVALKTLI VIHRTLREGD
101: PTFREELLIY SRRGNVLHIS NFKDDSGPLA WDCSAWVRTY ALYLEERLSC FRILKYDIEA ERLMKSPQES AKGHSRTRTL CCPDLLEQLL ALQQLLFRLI
201: GCRPEGAACG NFLIQYALAL VLKESFKIYC AINDGIINLV DMFFDMSKYD AVKALDIYKR AGQQAESLSE FYEFGKCLEL ARTFQFPTLR QPPPSFLATM
301: EEYVREAPGV GSVSSKRLVI LTYQQEEAAP AEDENPDEED EKQPPEEEQP PEEEQPPEEQ PPPEPEPEPI TEEEAQPATS GDLLGLDEIN PVAAELEQSN
401: ALALAIISPG DDTKPSSTHD LFGTDSSGWE LALVTTASSN TSQLVESKLA GGFDRLLLES LYEDSARSQQ IAGAYSSGGL DANPSDYNDP FAMSNSIAPP
501: PSVQMALMAQ QQQQQQQQHM MVPYQPQQAQ QQMASANPFG DPFAGFPQGA TTQSNQHLL

Best Arabidopsis Sequence Match ( AT1G14910.1 )
(BLAST)

001: MGTLQSWRRA YGALKDTTKV GLVRVNSDYA ELDVAIVKAT NHVECPPKDR HLRKIFLATS AIRPRADVAY CIHALSRRLH KTRNWTVALK ALLVIHRLLR
101: DGDPTFREEL LNFSQKGRIM QISNFKDDSS PVAWDCSGWV RTYALFLEER LECFRVLKYD IEAERLPKVS PGQEKGYSKT RDLDGEKLLE QLPALQQLLH
201: RLIGCKPEGA AKHNHIIQYA LSLVLKESFK VYCAINEGII NLVEKFFEMP RHEAIKALEI YKRAGLQAGN LSAFYEVCKG LELARNFQFP VLREPPQSFL
301: TTMEEYMRDA PQMVDVTSGP LLLTYTPDDG LTSEDVGPSH EEHETSSPSD SAVVPSEETQ LSSQSPPSVE TPQNFIDTDD LLGLHDDTPD PLAILDQNAL
401: ALALVSNDVD SSPFSFGQAR DLDPSGWELA LVTTPSNDIS AATERQLAGG LDTLTLNSLY DDGALRAAQQ PAYGVPASNP FEVQDLFAFS DSVSPPSAVN
501: NPFGLYEPTY HQQEQQPQLQ VAPSPANPFG DFGEFPIVPV SEPQSTTSFG AFPVPVSEPS NTTGFGEIPV VPVTEPPNTT AFGEFPVVPV SEPQNITGFG
601: ALPVTPASEP SNTTGFGEFP VVSVSAPQNT TGFGALPVIP VSEPSKTTGL GEFPVVPVSE PQNTTGFGEF PVNAGAHEQH NSNNPFGSTG FL

Arabidopsis Description

Putative clathrin assembly protein At1g14910 [Source:UniProtKB/Swiss-Prot;Acc:P94017]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.