Factsheet for GSMUA_Achr6P03060_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P23570_001	Banana	cytosol	88.12	88.44
VIT_11s0016g05900.t01	Wine grape	cytosol	70.38	75.79
KRH20163	Soybean	cytosol	73.49	73.63
KRH03643	Soybean	mitochondrion	72.58	72.45
Zm00001d037484_P002	Maize	cytosol, mitochondrion	72.76	72.23
Solyc07g007820.2.1	Tomato	cytosol	73.49	71.4
KXG19435	Sorghum	cytosol, mitochondrion	73.13	70.92
Os06t0175500-01	Rice	plasma membrane	72.76	69.82
TraesCS7A01G138400.1	Wheat	cytosol	71.66	69.5
HORVU7Hr1G028590.1	Barley	cytosol	71.66	69.38
CDY41768	Canola	cytosol, mitochondrion	50.46	69.35
TraesCS7B01G040500.1	Wheat	cytosol	71.3	69.15
TraesCS7D01G140200.1	Wheat	cytosol	71.3	69.15
CDY71126	Canola	cytosol, mitochondrion	53.75	69.01
PGSC0003DMT400017184	Potato	cytosol	53.02	67.29
Zm00001d045154_P002	Maize	mitochondrion	72.21	66.05
KXG31293	Sorghum	cytosol	65.45	65.09
AT5G35200.2	Thale cress	cytosol	64.17	64.52
Bra038937.1-P	Field mustard	mitochondrion	64.53	64.18
CDY12401	Canola	cytosol, mitochondrion	63.25	64.07
Os02t0803300-01	Rice	cytosol	65.27	62.74
Zm00001d052008_P003	Maize	cytosol	62.16	61.48
HORVU6Hr1G087330.4	Barley	cytosol	60.69	57.04
TraesCS6A01G370500.1	Wheat	cytosol	60.15	56.53
TraesCS6D01G354100.2	Wheat	cytosol	60.51	55.91
GSMUA_Achr4P05920_001	Banana	cytosol	55.94	55.84
TraesCS6B01G407500.2	Wheat	cytosol	60.33	55.84
GSMUA_Achr4P13420_001	Banana	cytosol	51.37	52.62
GSMUA_Achr9P21890_001	Banana	cytosol	52.65	51.43
GSMUA_Achr1P15690_001	Banana	cytosol	50.64	49.55
GSMUA_Achr7P04960_001	Banana	cytosol	49.73	49.45
GSMUA_Achr3P05590_001	Banana	cytosol	49.36	49.45
GSMUA_Achr4P20660_001	Banana	cytosol	49.54	48.65
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	32.54	33.52
GSMUA_Achr10P...	Banana	mitochondrion	29.43	31.88
GSMUA_Achr11P...	Banana	cytosol	29.8	31.35
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	28.34	29.41
GSMUA_Achr11P...	Banana	cytosol	24.13	28.95
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	27.24	23.58
GSMUA_Achr2P18700_001	Banana	cytosol	20.29	22.16
GSMUA_Achr7P02300_001	Banana	plastid	20.11	21.78
GSMUA_Achr8P22890_001	Banana	mitochondrion	13.89	19.14
GSMUA_Achr7P02390_001	Banana	cytosol	14.44	18.99
GSMUA_Achr7P18620_001	Banana	mitochondrion	12.98	18.3
GSMUA_Achr3P20230_001	Banana	mitochondrion	9.69	16.01

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSMUA_Achr6G03060_001
EnsemblPlants:GSMUA_Achr6P03060_001	EnsemblPlants:GSMUA_Achr6T03060_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0T3Q4
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF32	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI000294EBDE	SEG:seg	:	:	:

Description

Putative clathrin assembly protein At5g35200 [Source:GMGC_GENE;Acc:GSMUA_Achr6G03060_001]

Coordinates

chr6:-:2101709..2111102

Molecular Weight (calculated)

60918.4 Da

IEP (calculated)

6.208

GRAVY (calculated)

-0.380

Length

547 amino acids

Sequence
(BLAST)

001: MSGGTQQSLR KYLGALKDTT TVSLAKVNSD YKELDIAIVK ATNHVERPAK EKYIRAIFYA ISAARPRADV AYCIHALARR LAKTHNWAVA LKTLIVIHRA
101: LREVDPTFRE ELINYGRSRN HMLNLAHFKD DSSAYAWDYS AWVRTYALYL EERLECFHVL KYDVETDPPR TKDLETAELL EQLPSLQQLQ HRLLGCQPQG
201: AACHNVIIHL ALSMVAGESI KIYNSISDGI INMVDKFFEM QRHDAVRALD IYRRAGQQAE RLSEFYEVCK SMDIRRGEKF IKIEQPPASF LTAMEDYVRD
301: APRASTVRKD QSRDDKDAAS KVVLAIEYKK TPEEEEAPPP PPPQPEPVKV EAPVSVVSEQ TDLLGLNGAT PVASELDNKN AMALAIVPVD NVPSSATSSS
401: LNPENGTTGW ELALVTTPSS NESAVTSSKL GGGFDKLTLD SLYDDAERRA NQNVSYNPWE MGRMAGPMMQ PVVHDPFYAS NAVAAPHFVQ MAAMAQQQQA
501: FLLQQQMMMS GQQPQQTPLN PFGNPYADVS YASGVPLQPS NAYSRLI

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.