Factsheet for Solyc07g007820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017184	Potato	cytosol	74.42	97.22
KRH20163	Soybean	cytosol	74.96	77.29
KRH03643	Soybean	mitochondrion	74.78	76.82
VIT_11s0016g05900.t01	Wine grape	cytosol	69.09	76.57
GSMUA_Achr6P03060_001	Banana	cytosol	71.4	73.49
CDY71126	Canola	cytosol, mitochondrion	54.71	72.3
CDY41768	Canola	cytosol, mitochondrion	50.98	72.11
GSMUA_Achr5P23570_001	Banana	cytosol	69.63	71.93
Zm00001d037484_P002	Maize	cytosol, mitochondrion	68.03	69.51
KXG19435	Sorghum	cytosol, mitochondrion	68.56	68.44
TraesCS7A01G138400.1	Wheat	cytosol	68.21	68.09
HORVU7Hr1G028590.1	Barley	cytosol	68.21	67.96
TraesCS7D01G140200.1	Wheat	cytosol	68.03	67.91
TraesCS7B01G040500.1	Wheat	cytosol	68.03	67.91
AT5G35200.2	Thale cress	cytosol	65.36	67.65
Bra038937.1-P	Field mustard	mitochondrion	65.54	67.09
CDY12401	Canola	cytosol, mitochondrion	64.3	67.04
Os06t0175500-01	Rice	plasma membrane	67.5	66.67
Os02t0803300-01	Rice	cytosol	64.65	63.97
Zm00001d045154_P002	Maize	mitochondrion	67.5	63.55
KXG31293	Sorghum	cytosol	61.63	63.09
Zm00001d052008_P003	Maize	cytosol	58.79	59.86
HORVU6Hr1G087330.4	Barley	cytosol	59.33	57.39
TraesCS6A01G370500.1	Wheat	cytosol	58.61	56.7
TraesCS6B01G407500.2	Wheat	cytosol	59.5	56.68
Solyc12g017440.1.1	Tomato	cytosol	30.02	56.52
TraesCS6D01G354100.2	Wheat	cytosol	59.33	56.42
Solyc04g007860.2.1	Tomato	cytosol, plastid	48.13	48.13
Solyc02g043810.2.1	Tomato	cytosol	49.02	47.75
Solyc12g010530.1.1	Tomato	cytosol	45.47	43.1
Solyc12g017430.1.1	Tomato	nucleus	14.56	38.68
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	28.95	28.06
Solyc06g011450.1.1	Tomato	cytosol	30.2	27.69
Solyc08g059660.1.1	Tomato	cytosol	30.73	27.2
Solyc07g008060.1.1	Tomato	cytosol	28.95	26.55
Solyc11g044860.1.1	Tomato	cytosol	20.96	23.6
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	15.99	21.74
Solyc01g005070.2.1	Tomato	mitochondrion	15.28	21.61
Solyc04g008350.1.1	Tomato	mitochondrion	14.39	20.61
Solyc12g006000.1.1	Tomato	cytosol	23.8	18.41
Solyc07g049380.1.1	Tomato	cytosol	23.27	17.63

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276
GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:K4CBQ2	PFAM:PF07651
PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF32	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009
EnsemblPlantsGene:Solyc07g007820.2	EnsemblPlants:Solyc07g007820.2.1	UniParc:UPI000276AFFB	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:+:2482207..2492806

Molecular Weight (calculated)

62460.1 Da

IEP (calculated)

5.407

GRAVY (calculated)

-0.462

Length

563 amino acids

Sequence
(BLAST)

001: MNEALKREMS GGGTQNSLRK TLGSLKDTTT VSLAKINSSY KELDIAIVKA TNHVEHPAKE KYIRAIFSAI SATRPRADVA YCIHALARRL SKTHNWAVAL
101: KTLIVIHRAL REVDPTFHEE LINYGRSRNR MLNMAHFKDD SSPNAWDYSA WVRSYALFLE ERLECFRVLK YDVETDRPRT KDLDTPELLE QLPALQQLLY
201: RINGCQPQGA SAHNFVIQLA LSMVASESIK IYNAISDGTV NLVDKFFEMQ RNDALRSLDI YRRAGQQAEA LSEFYEICKN IDVGRGQKFI KIEQPPASFL
301: QAMEEYVRDA PRASTVRKDS EPKVILAIEY KKDPEVKDAG SLSPPPPEPE KEPEPKPEPV KTEAPLAETA DLLSMDDPSP AVAELDEKNS LALAIIPVGS
401: TNPPTSTGSN FTNGTSGWEL ALVEAPSSNE SAATASKLGG GLDKLTLDSL YDDAMRQTNQ NVSYNPWEPA PAVAPMMQNV GYDPFYVSNM VAAPTNVQMA
501: AMANQQQAFM LQQQQQQQQH MMMMTPQQQP NANPFANPYG AAANPYGPGM PVQTAYNPYT GLI

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.