Factsheet for Solyc01g005170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 2
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	77.78	73.18
KRH41749	Soybean	cytosol	31.16	45.58
KRH60451	Soybean	mitochondrion	47.1	44.02
Solyc12g017440.1.1	Tomato	cytosol	20.29	28.09
VIT_18s0089g01330.t01	Wine grape	cytosol	19.81	20.4
AT1G33340.1	Thale cress	cytosol, mitochondrion, nucleus	18.12	20.05
Bra028000.1-P	Field mustard	mitochondrion	17.63	19.68
CDX93766	Canola	mitochondrion	17.63	19.68
CDY50184	Canola	mitochondrion	17.39	19.57
TraesCS4D01G085400.1	Wheat	mitochondrion	17.87	18.73
TraesCS4B01G088300.1	Wheat	mitochondrion	17.87	18.73
Solyc01g005070.2.1	Tomato	mitochondrion	17.87	18.59
Zm00001d049002_P001	Maize	mitochondrion	18.12	18.52
HORVU4Hr1G015050.1	Barley	mitochondrion	17.63	18.48
TraesCS4A01G227800.1	Wheat	mitochondrion	17.63	18.48
Solyc04g008350.1.1	Tomato	mitochondrion	17.39	18.32
Solyc04g007860.2.1	Tomato	cytosol, plastid	24.88	18.29
Zm00001d007272_P001	Maize	mitochondrion	16.43	17.22
Os11t0244600-01	Rice	cytosol	16.18	16.96
Solyc06g011450.1.1	Tomato	cytosol	24.88	16.78
Solyc07g008060.1.1	Tomato	cytosol	24.88	16.78
EES08262	Sorghum	mitochondrion, plastid	17.39	16.48
Solyc02g043810.2.1	Tomato	cytosol	22.71	16.26
Solyc07g007820.2.1	Tomato	cytosol	21.74	15.99
Solyc08g059660.1.1	Tomato	cytosol	24.15	15.72
Solyc12g010530.1.1	Tomato	cytosol	22.46	15.66
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	21.74	15.49
Solyc07g049380.1.1	Tomato	cytosol	25.85	14.4
Solyc12g006000.1.1	Tomato	cytosol	25.12	14.29
Solyc11g044860.1.1	Tomato	cytosol	14.73	12.2
Solyc12g017430.1.1	Tomato	nucleus	1.21	2.36

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276
GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:K4AS84	PFAM:PF07651
PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF22	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009
EnsemblPlantsGene:Solyc01g005170.1	EnsemblPlants:Solyc01g005170.1.1	TMHMM:TMhelix	UniParc:UPI00027618DC	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:141656..144896

Molecular Weight (calculated)

46699.4 Da

IEP (calculated)

7.015

GRAVY (calculated)

0.049

Length

414 amino acids

Sequence
(BLAST)

001: MQNRIKKVFT SLREHTCVSY AKFATIGGFC DLDHIVVKAT SPDDTPLPDR YVLEILQIFS ICPSSFGPFA LSFSQRFANT RCWRVALKCL HLLHRLLKAL
101: PHTSPLREEL MLARSNGLMC LYPCNFKDRS SSASLDYTYF IWSYARLLDE SLDCCATQGK EIDDYHSTSH EIFIDKMDEV RLMLEFLPQL QSLIDRVIDC
201: RPTGQATRNA IVQSVMKHVI RDSFTCYTTF RKELVEILDH LIQLPYINCS AAFEIYKKAA SQANELSEFY DWCKSLGLCG IYECPFIDKI PQIQITALES
301: FLNGMWQQSA DDPSSSTSVS SLSSNEDGND CKQKQAMMFS TEKLSTAKSA GVPLLIYCSV VPTAVKPIRY STGFLLSPVS SYFAALLLVL LHFGHPNLIL
401: YAKSASIVPF SCNI

Best Arabidopsis Sequence Match ( AT1G03050.1 )
(BLAST)

001: MGSSKFKRAI GAVKDQTSVG LAKVNGRSAS LSELDVAIVK ATRHEEFPAE EKYIREILSL TSYSRSYINA CVSTLSRRLN KTKCWTVALK TLILIQRLLG
101: EGDQAYEQEI FFATRRGTRL LNMSDFRDVS RSNSWDYSAF VRTYALYLDE RLDFRMQARH GKRGVYCVGG EADEEEQDQA AADLSTAIVV RSQPIAEMKT
201: EQIFIRIQHL QQLLDRFLAC RPTGNARNNR VVIVALYPIV KESFQIYYDV TEIMGILIER FMELDIPDSI KVYDIFCRVS KQFEELDQFY SWCKNMGIAR
301: SSEYPEIEKI TQKKLDLMDE FIRDKSALEH TKQSKSVKSE ADEDDDEART EEVNEEQEDM NAIKALPEPP PKEEDDVKPE EEAKEEVIIE KKQEEMGDLL
401: DLGNTNGGEA GQAGDSLALA LFDGPYASGS GSESGPGWEA FKDDSADWET ALVQTATNLS GQKSELGGGF DMLLLNGMYQ HGAVNAAVKT STAYGASGSA
501: SSMAFGSAGR PAATMLALPA PSTANGNAGN INSPVPMDPF AASLEVAPPA YVQMNDMEKK QRMLMEEQMM WDQYSRDGRQ GHMNLRQNQN QPYSYTPQY

Arabidopsis Description

Putative clathrin assembly protein At1g03050 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA65]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.