Factsheet for VIT_18s0089g01330.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09259	Soybean	cytosol, nucleus, peroxisome	60.45	56.51
KRH38757	Soybean	cytosol, nucleus, peroxisome	59.45	55.07
AT1G33340.1	Thale cress	cytosol, mitochondrion, nucleus	50.25	54.01
Bra028000.1-P	Field mustard	mitochondrion	48.01	52.02
CDX93766	Canola	mitochondrion	48.01	52.02
CDY50184	Canola	mitochondrion	47.01	51.36
HORVU4Hr1G015050.1	Barley	mitochondrion	25.87	26.33
TraesCS4B01G088300.1	Wheat	mitochondrion	25.62	26.08
TraesCS4D01G085400.1	Wheat	mitochondrion	25.37	25.82
Zm00001d049002_P001	Maize	mitochondrion	25.62	25.43
TraesCS4A01G227800.1	Wheat	mitochondrion	24.63	25.06
EES08262	Sorghum	mitochondrion, plastid	26.87	24.71
Zm00001d007272_P001	Maize	mitochondrion	24.13	24.56
Os11t0244600-01	Rice	cytosol	22.89	23.29
VIT_01s0011g06370.t01	Wine grape	mitochondrion	19.4	20.26
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	21.89	20.0
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	20.4	19.81
VIT_11s0016g05900.t01	Wine grape	cytosol	24.88	19.68
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	26.87	18.56
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	25.62	18.17
VIT_11s0103g00620.t01	Wine grape	cytosol	25.87	17.6
VIT_12s0059g01330.t01	Wine grape	cytosol	25.87	17.6
VIT_11s0037g01000.t01	Wine grape	cytosol	22.14	17.45
VIT_04s0008g05540.t01	Wine grape	cytosol	28.11	17.04
VIT_11s0016g05480.t01	Wine grape	cytosol	25.62	16.27

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100262005	wikigene:100262005	MapMan:35.1	EMBL:AM426169
InterPro:ANTH_dom	ProteinID:CAN60213	ProteinID:CAN60213.1	ProteinID:CCB44095	ProteinID:CCB44095.1	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	UniProt:F6GVW0	EMBL:FN594956	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136
GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	EntrezGene:LOC100262005
wikigene:LOC100262005	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF14	SMART:SM00273
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI00019854EF	ArrayExpress:VIT_18s0089g01330	EnsemblPlantsGene:VIT_18s0089g01330	EnsemblPlants:VIT_18s0089g01330.t01
RefSeq:XP_002263734	RefSeq:XP_002263734.1	:	:	:	:

Description

No Description!

Coordinates

chr18:-:29243610..29244827

Molecular Weight (calculated)

45080.3 Da

IEP (calculated)

7.381

GRAVY (calculated)

-0.160

Length

402 amino acids

Sequence
(BLAST)

001: MGVDVQGKLR RALGSVKDHA SIGKAMIYHH DGFSDLEVAV VRATGHDDSP IDDKYMHEIL FLVSNSPSSI TFLAERISRR LGKTRDRLVA LKTLVLIHRL
101: LRGGNRCFEQ QLRGAHVSGH LRMTTGWFLM SNTEPSVCFL HRYAAYLQER MGWVINQAGK LEPVMSQALE LQFYEEKLIH TVLRRLPRCQ ILLDRVLDCS
201: PSEISPSDSL AQVAMSNTLK ESFQVYMAFC EGVAALVNMF FELTRPVRAL ACNILRRASQ QSQELHDLYE HCKTIIGNKN LEYPSVQIIS IDHVLALEQL
301: LSFTPTPYGS VLTTKAAGSK PPAILDYLTR STKMQSTKTG TEGQGEKDDH TSESTLSPTL FSCTLETKIS KVWVVFDEEE SAESQVSIER LFIKGTVSNL
401: SQ

Best Arabidopsis Sequence Match ( AT1G33340.1 )
(BLAST)

001: MRLDLSAKFR QVLGLAKDHA SIGRAIVQNY NEKAFFDIEV AVVRATSHDD CPVDDKTMHE ILFLVSNTPG SIPFLAEQIS RRLAKTRDCL VAGKTLLLFH
101: RLLRGSSRSI EQQLHIAHTS GHLQIGCSWF MMSLDSRSFV FLQNYVAYLQ ERVGWIINQA GKLEPVMSGG TKFSRYKEKS MDLVFHILPK CQEFIAQVLK
201: CSPVDAWPID NLVQAATGNI LKESFQVYMT YSDGMTALVS MLFDLSRPAR DLACGMLRKA SQQIQDLRIL YDKCRGFAGM KSLDYPSVQA ISMDHIVALE
301: ECSSYGGKRG FSLSTNLRDA ITCNELKQEQ HSASFSSTSP FSLPVETKIS MVWVVFDNED GEESDKQTEK AYER

Arabidopsis Description

Putative clathrin assembly protein At1g33340 [Source:UniProtKB/Swiss-Prot;Acc:Q9C502]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.