CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93766	Canola	mitochondrion	98.1	97.3
AT1G33340.1	Thale cress	cytosol, mitochondrion, nucleus	84.51	83.16
VIT_18s0089g01330.t01	Wine grape	cytosol	51.36	47.01
KRH09259	Soybean	cytosol, nucleus, peroxisome	53.26	45.58
KRH38757	Soybean	cytosol, nucleus, peroxisome	51.63	43.78
HORVU4Hr1G015050.1	Barley	mitochondrion	24.18	22.53
TraesCS4B01G088300.1	Wheat	mitochondrion	23.91	22.28
TraesCS4A01G227800.1	Wheat	mitochondrion	23.91	22.28
CDY42239	Canola	cytosol	20.38	22.26
Zm00001d049002_P001	Maize	mitochondrion	24.46	22.22
TraesCS4D01G085400.1	Wheat	mitochondrion	23.64	22.03
Zm00001d007272_P001	Maize	mitochondrion	22.83	21.27
Os11t0244600-01	Rice	cytosol	22.55	21.01
EES08262	Sorghum	mitochondrion, plastid	24.73	20.82
CDY41768	Canola	cytosol, mitochondrion	21.74	20.1
CDY71126	Canola	cytosol, mitochondrion	22.83	19.72
CDY12691	Canola	mitochondrion	18.21	18.41
CDX81471	Canola	mitochondrion	18.21	18.21
CDY60368	Canola	mitochondrion	18.48	17.99
CDY57160	Canola	mitochondrion	18.48	17.99
CDY01884	Canola	mitochondrion	17.12	17.65
CDX96047	Canola	mitochondrion	17.12	17.45
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	19.57	17.39
CDY47927	Canola	cytosol	23.64	17.23
CDY64692	Canola	mitochondrion	17.66	17.15
CDY03862	Canola	mitochondrion	17.66	17.06
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	20.38	17.05
CDY11530	Canola	cytosol	26.36	16.72
CDY45281	Canola	cytosol	15.49	16.62
CDY41097	Canola	cytosol	15.49	16.57
CDY35361	Canola	cytosol	26.36	16.41
CDX76976	Canola	cytosol	26.36	16.36
CDX68831	Canola	cytosol	25.0	15.57
CDX75232	Canola	cytosol	25.0	15.51
CDY12401	Canola	cytosol, mitochondrion	22.55	15.37
CDY17459	Canola	cytosol	23.37	15.09
CDY04095	Canola	cytosol	23.37	15.06
CDY36239	Canola	cytosol	23.37	15.06
CDY17660	Canola	cytosol	23.37	15.06
CDY52732	Canola	cytosol	23.91	15.04
CDY32494	Canola	mitochondrion	23.37	15.04
CDY15448	Canola	mitochondrion	23.37	15.04
CDY38276	Canola	cytosol	23.91	14.86
CDY21904	Canola	mitochondrion	24.18	14.86
CDY22070	Canola	mitochondrion	24.18	14.78
CDY09433	Canola	cytosol, mitochondrion	23.1	14.73
CDY18283	Canola	cytosol, nucleus, peroxisome	19.02	14.58
CDY48813	Canola	cytosol	23.1	14.58
CDX94400	Canola	cytosol	23.1	14.26
CDX89382	Canola	cytosol	22.83	13.98
CDY15531	Canola	cytosol, golgi, nucleus	23.1	13.93
CDX86594	Canola	cytosol, golgi, nucleus	22.55	12.77
CDY45299	Canola	mitochondrion	23.1	12.35
CDY53525	Canola	cytosol, mitochondrion	23.1	12.2
CDY53396	Canola	cytosol	19.29	11.93
CDX76760	Canola	cytosol	12.5	9.85
CDX76977	Canola	cytosol	13.59	9.58
CDY18145	Canola	cytosol	11.68	9.23
CDX89917	Canola	cytosol	11.68	9.17
CDX86691	Canola	cytosol, mitochondrion	23.91	8.7
CDY37444	Canola	nucleus	1.63	2.14

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	GO:A0A078ILH1	UniProt:A0A078ILH1	InterPro:ANTH_dom
EnsemblPlants:CDY50184	ProteinID:CDY50184	ProteinID:CDY50184.1	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSBRNA2T00096109001	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF14
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0004EF1E18	SEG:seg	:

Description

BnaCnng18890DBnaCnng18890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILH1]

Coordinates

chrLK032887:+:82485..83766

Molecular Weight (calculated)

41416.1 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.150

Length

368 amino acids

Sequence
(BLAST)

001: MRLHLSAKFR QVLGHAKDQA SIGRAIVQNY NEKSFFDIEV AVVRATSHDD CPVGDKTMHE ILFHVSNTPG AVPFLAEQIS RRLAKTRDYL VAGKTLLLIH
101: RLLRSSSRCI EQQLHIAHTS GHLQIGCCWF MMSQDHPSFA FLQNYVAYLE ERVGWIINQA GKLEPVMSGG TKCSRYKEKS MDLVFHILPK CQEFIAKVLK
201: CSPVDVWRMD NLVQAATGSI LKESFQVYMT YSDGIAALSD MLFDLSRPAR DLACGMLRKG SQQIEDLRVM YEKCRGFTGM KSLDYPSVQA ITMDHTVALE
301: QCSSYNTRAG SVLKRTGGER GFSVSTNLRD SVTCNEKFAS TSLFLLPVET KISMVWVVFD NEESDKPT

Best Arabidopsis Sequence Match ( AT1G33340.1 )
(BLAST)

001: MRLDLSAKFR QVLGLAKDHA SIGRAIVQNY NEKAFFDIEV AVVRATSHDD CPVDDKTMHE ILFLVSNTPG SIPFLAEQIS RRLAKTRDCL VAGKTLLLFH
101: RLLRGSSRSI EQQLHIAHTS GHLQIGCSWF MMSLDSRSFV FLQNYVAYLQ ERVGWIINQA GKLEPVMSGG TKFSRYKEKS MDLVFHILPK CQEFIAQVLK
201: CSPVDAWPID NLVQAATGNI LKESFQVYMT YSDGMTALVS MLFDLSRPAR DLACGMLRKA SQQIQDLRIL YDKCRGFAGM KSLDYPSVQA ISMDHIVALE
301: ECSSYGGKRG FSLSTNLRDA ITCNELKQEQ HSASFSSTSP FSLPVETKIS MVWVVFDNED GEESDKQTEK AYER

Arabidopsis Description

Putative clathrin assembly protein At1g33340 [Source:UniProtKB/Swiss-Prot;Acc:Q9C502]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.