CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007272_P001	Maize	mitochondrion	81.01	89.62
TraesCS4B01G088300.1	Wheat	mitochondrion	65.9	72.91
HORVU4Hr1G015050.1	Barley	mitochondrion	65.68	72.66
TraesCS4D01G085400.1	Wheat	mitochondrion	65.45	72.41
TraesCS4A01G227800.1	Wheat	mitochondrion	65.22	72.15
Os11t0244600-01	Rice	cytosol	61.1	67.59
VIT_18s0089g01330.t01	Wine grape	cytosol	24.71	26.87
CDX93766	Canola	mitochondrion	21.28	25.07
Bra028000.1-P	Field mustard	mitochondrion	21.05	24.8
CDY50184	Canola	mitochondrion	20.82	24.73
KRH09259	Soybean	cytosol, nucleus, peroxisome	24.26	24.65
KRH38757	Soybean	cytosol, nucleus, peroxisome	24.26	24.42
AT1G33340.1	Thale cress	cytosol, mitochondrion, nucleus	20.37	23.8
EES13983	Sorghum	mitochondrion	16.02	17.41
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	16.48	17.39
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	16.7	16.59
EES06356	Sorghum	cytosol	19.91	15.26
KXG20534	Sorghum	cytosol, mitochondrion	19.68	14.83
EER92480	Sorghum	cytosol, mitochondrion, plastid	21.74	14.73
EES19899	Sorghum	cytosol, mitochondrion, plastid	18.76	14.54
EER96828	Sorghum	mitochondrion	13.27	14.43
EES01312	Sorghum	cytosol	18.31	14.21
KXG20765	Sorghum	mitochondrion	17.62	13.56
EES18258	Sorghum	cytosol	19.22	13.48
KXG33814	Sorghum	cytosol, mitochondrion	17.16	13.18
KXG19435	Sorghum	cytosol, mitochondrion	16.7	12.94
EES18894	Sorghum	cytosol	18.31	12.84
KXG31293	Sorghum	cytosol	14.87	11.82

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	EntrezGene:8076919	InterPro:ANTH_dom	UniProt:C5Y7T4
InterPro:Clathrin_AP_dom2	EnsemblPlants:EES08262	ProteinID:EES08262	ProteinID:EES08262.1	InterPro:ENTH	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809
InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF14	EnsemblPlantsGene:SORBI_3005G086300
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0001A86646	RefSeq:XP_002449274.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:11929798..11932994

Molecular Weight (calculated)

46348.8 Da

IEP (calculated)

6.440

GRAVY (calculated)

-0.127

Length

437 amino acids

Sequence
(BLAST)

001: MKVFKGKIWA AIGSLMDHAS ATSTTTKSSS SSAAAVPDRA LLADIEAAIE RCTGSSGGGG GGNDDRHVHE ILFLVSNAPG AITFLSRRIT ARLEAARAPA
101: AALRSLLLVH RLLRAGDRYF EQDFRGLWAA RELRVDAPRC SCSPLSAAAG VVHYASAGGA AVVASGACAF VHGYSAYLEE RMQWVINQAG NLEPARKPTP
201: PPPDHDAGKR PLSSSSSSSS SSSTSSNDAS AETLLFKLAM CQRLLDLAIQ LLPDNNTSAS AAARSAFGIV LRESFKVYDA FAEGVDVMLL LSRSLAGLSK
301: PSRVTAHEIL KKACAQTPEL KEFYHKCKRS SASSKSLEYP LVRVVTPAQA FAMEMEPPVA VTTMVPIPEE EDGCLQEEKV EAKAGAEAKA IDGGDDGSPF
401: AHKMETTIST VWVEFDDEDQ KLITAADDHS LKAVQPS

Best Arabidopsis Sequence Match ( AT1G33340.1 )
(BLAST)

001: MRLDLSAKFR QVLGLAKDHA SIGRAIVQNY NEKAFFDIEV AVVRATSHDD CPVDDKTMHE ILFLVSNTPG SIPFLAEQIS RRLAKTRDCL VAGKTLLLFH
101: RLLRGSSRSI EQQLHIAHTS GHLQIGCSWF MMSLDSRSFV FLQNYVAYLQ ERVGWIINQA GKLEPVMSGG TKFSRYKEKS MDLVFHILPK CQEFIAQVLK
201: CSPVDAWPID NLVQAATGNI LKESFQVYMT YSDGMTALVS MLFDLSRPAR DLACGMLRKA SQQIQDLRIL YDKCRGFAGM KSLDYPSVQA ISMDHIVALE
301: ECSSYGGKRG FSLSTNLRDA ITCNELKQEQ HSASFSSTSP FSLPVETKIS MVWVVFDNED GEESDKQTEK AYER

Arabidopsis Description

Putative clathrin assembly protein At1g33340 [Source:UniProtKB/Swiss-Prot;Acc:Q9C502]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.