CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038892_P001	Maize	mitochondrion	96.45	96.63
Os05t0549000-01	Rice	plasma membrane	91.13	90.65
TraesCS1D01G375800.1	Wheat	cytosol, mitochondrion, plastid	87.41	87.26
TraesCS1B01G388800.1	Wheat	cytosol, mitochondrion, plastid	87.23	87.23
TraesCS1A01G369700.1	Wheat	cytosol, mitochondrion, plastid	87.23	87.08
Zm00001d009452_P007	Maize	cytosol, mitochondrion, plastid	88.65	85.91
EES01312	Sorghum	cytosol	81.03	81.17
HORVU1Hr1G078340.3	Barley	plastid	87.23	77.73
GSMUA_Achr9P21890_001	Banana	cytosol	75.71	76.25
GSMUA_Achr4P13420_001	Banana	cytosol	71.81	75.84
KRH42533	Soybean	cytosol	70.04	69.54
KRH58627	Soybean	nucleus	69.86	69.24
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	68.97	68.61
PGSC0003DMT400075923	Potato	cytosol	67.38	67.5
Solyc04g007860.2.1	Tomato	cytosol, plastid	67.38	67.5
KRH38239	Soybean	cytosol	65.78	66.97
CDY17660	Canola	cytosol	64.89	64.1
Bra024871.1-P	Field mustard	cytosol	64.89	64.1
AT2G01600.1	Thale cress	cytosol, mitochondrion	64.72	63.92
CDY36239	Canola	cytosol	64.36	63.57
CDY09433	Canola	cytosol, mitochondrion	64.01	62.56
CDY48813	Canola	cytosol	64.54	62.44
CDY17459	Canola	cytosol	62.41	61.75
Bra017439.1-P	Field mustard	cytosol	62.41	61.65
CDY04095	Canola	cytosol	62.41	61.65
EES06356	Sorghum	cytosol	57.8	57.19
KXG20765	Sorghum	mitochondrion	56.21	55.81
KXG20534	Sorghum	cytosol, mitochondrion	56.56	55.0
AT1G14910.1	Thale cress	mitochondrion	61.52	50.14
Bra026647.1-P	Field mustard	cytosol	63.12	49.44
KXG19435	Sorghum	cytosol, mitochondrion	49.29	49.29
CDY53525	Canola	cytosol, mitochondrion	59.93	48.49
CDY45299	Canola	mitochondrion	59.04	48.4
KXG31293	Sorghum	cytosol	46.1	47.27
Bra026179.1-P	Field mustard	cytosol, mitochondrion	59.22	43.6
EER92480	Sorghum	cytosol, mitochondrion, plastid	32.09	28.06
EES18894	Sorghum	cytosol	29.26	26.48
EES18258	Sorghum	cytosol	29.26	26.48
KXG33814	Sorghum	cytosol, mitochondrion	25.18	24.96
EES13983	Sorghum	mitochondrion	16.67	23.38
EER96828	Sorghum	mitochondrion	16.13	22.64
EES08262	Sorghum	mitochondrion, plastid	14.54	18.76

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	EntrezGene:8069010	InterPro:ANTH_dom	UniProt:C5YUZ0
InterPro:Clathrin_AP_dom2	EnsemblPlants:EES19899	ProteinID:EES19899	ProteinID:EES19899.1	InterPro:ENTH	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809
InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	SMART:SM00273
EnsemblPlantsGene:SORBI_3009G219000	SUPFAM:SSF48464	SUPFAM:SSF89009	unigene:Sbi.14139	UniParc:UPI0001A891E9	RefSeq:XP_002441469.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:56262653..56268998

Molecular Weight (calculated)

62526.3 Da

IEP (calculated)

4.968

GRAVY (calculated)

-0.364

Length

564 amino acids

Sequence
(BLAST)

001: MASMQSWRKA YGAIKDTTTV SLANLNSDFK DLDVAIVKAT NHVECPPKER HLRKVVAATS IARPRADVAY CIHALARRLA KTRNWIVALK TLVVIHRLLR
101: EGDPTFREEL LNFTQRGRIL QLSNFKDDSS PIAWDCSAWV RTYGLFLEER LECFRVLKYD VEAERLSKQG QGPEKGHSRT RELDSQDLLE QLPALQQLLY
201: RLVGCRPEGA ANSNYLVQYA LALVLKESFK IYCAINDGII NLVDKFFEMP RHEALKALEI YRRAGQQAGS LSDFYENCRG LELARNFQFP TLREPPQTFL
301: ATMEEYVKEA PRMVPVREPL ELPERLLLTY KPEESEEIPE PAPVEEEKAP VEEPVPVPPV TEVVSSPPKT EVADTGDLLG LDDPNPAVSA IEESNALALA
401: IVPTDGASTT SNTAFQDKGF DATGWELALV TAPSNTTSSS SVGQLGGGFD KLILDSLYDD GAYRQRQQQQ LYGSAAPNPF MTNDPFAMSN QVAPPPSVQM
501: AAMSQQHPQI PTMMQPNPFG PPMQPQMSMG PATNNPFLDS GFGAFPVANN GHQQHNPFGS AQLL

Best Arabidopsis Sequence Match ( AT2G01600.1 )
(BLAST)

001: MGTLQSWRKA YGALKDSTKV GLVRVNSEYA DLDVAIVKAT NHVECPPKDR HLRKIFAATS VTRARADVAY CIHALSRRLH KTRNWTVALK TLIVIHRLLR
101: EGDPTFREEL LNFSQRGRIL QLSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRVLKYD TEAERLPKSN PGQDKGYSRT RDLDGEELLE QLPALQQLLY
201: RLIGCRPEGA ANHNHVIQYA LALVLKESFK VYCAINDGII NLIDKFFEMA KHEAITSLEI YKRAGQQARS LSDFYEACKG LELARNFQFP VLREPPQSFL
301: TTMEEYIKEA PRVVDVPAEP LLLTYRPDDG LTTEDTEPSH EEREMLPSDD VVVVSEETEP SPPPPPSANA QNFIDTDDLW GLNTGAPDTS VIEDQNALAL
401: AIVSTDADPP TPHFGQPNNY DPTGWELALV TAPSSDISAS TERKLAGGLD TLTLSSLYDD GAYIASQRPV YGAPAPNPFA SHDPFASSNG TAPPPQQQAV
501: NNPFGAYQQT YQHQPQPTYQ HQSNPPTNNS NPFGDFGEFP VNPVSQQPNT SGYGDFSVNQ HNNPFRSTGL I

Arabidopsis Description

Putative clathrin assembly protein At2g01600 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBH2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.