Factsheet for TraesCS1B01G388800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G375800.1	Wheat	cytosol, mitochondrion, plastid	99.29	99.11
TraesCS1A01G369700.1	Wheat	cytosol, mitochondrion, plastid	98.94	98.76
Os05t0549000-01	Rice	plasma membrane	87.94	87.48
EES19899	Sorghum	cytosol, mitochondrion, plastid	87.23	87.23
Zm00001d038892_P001	Maize	mitochondrion	86.88	87.03
HORVU1Hr1G078340.3	Barley	plastid	96.63	86.1
TraesCS3B01G292000.2	Wheat	cytosol, mitochondrion, plastid	77.66	77.94
Zm00001d009452_P007	Maize	cytosol, mitochondrion, plastid	79.61	77.15
GSMUA_Achr9P21890_001	Banana	cytosol	74.29	74.82
GSMUA_Achr4P13420_001	Banana	cytosol	70.57	74.53
KRH42533	Soybean	cytosol	68.62	68.13
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	67.91	67.55
KRH58627	Soybean	nucleus	67.73	67.14
Solyc04g007860.2.1	Tomato	cytosol, plastid	65.96	66.07
PGSC0003DMT400075923	Potato	cytosol	65.78	65.9
KRH38239	Soybean	cytosol	63.48	64.62
AT2G01600.1	Thale cress	cytosol, mitochondrion	63.12	62.35
Bra024871.1-P	Field mustard	cytosol	63.12	62.35
CDY17660	Canola	cytosol	63.12	62.35
CDY36239	Canola	cytosol	62.77	62.0
CDY09433	Canola	cytosol, mitochondrion	62.41	61.01
CDY48813	Canola	cytosol	62.94	60.89
CDY04095	Canola	cytosol	61.52	60.77
Bra017439.1-P	Field mustard	cytosol	61.52	60.77
CDY17459	Canola	cytosol	61.35	60.7
TraesCS7B01G322300.1	Wheat	mitochondrion	53.55	53.45
TraesCS6B01G181800.1	Wheat	cytosol	54.43	53.21
TraesCS7B01G393800.2	Wheat	cytosol	53.37	52.81
TraesCS7B01G430700.2	Wheat	cytosol	12.59	49.65
AT1G14910.1	Thale cress	mitochondrion	60.82	49.57
CDY53525	Canola	cytosol, mitochondrion	60.46	48.92
Bra026647.1-P	Field mustard	cytosol	62.41	48.89
CDY45299	Canola	mitochondrion	59.57	48.84
TraesCS7B01G040500.1	Wheat	cytosol	48.4	48.4
Bra026179.1-P	Field mustard	cytosol, mitochondrion	59.75	43.99
TraesCS6B01G407500.2	Wheat	cytosol	44.15	42.13
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	32.09	28.37
TraesCS1B01G277200.1	Wheat	cytosol	28.55	26.61
TraesCS1B01G044800.1	Wheat	cytosol	28.55	26.05
TraesCS5B01G296700.1	Wheat	mitochondrion	14.18	20.94
TraesCS4B01G088300.1	Wheat	mitochondrion	13.48	19.24

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	ncoils:Coil
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF56	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:TraesCS1B01G388800	EnsemblPlants:TraesCS1B01G388800.1
TIGR:cd03564	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:622475750..622482806

Molecular Weight (calculated)

62478.9 Da

IEP (calculated)

4.846

GRAVY (calculated)

-0.387

Length

564 amino acids

Sequence
(BLAST)

001: MASMQSWRKA YGAIKDTTTV SLANINSDFK DLDVAIVKAT NHVECPPKER HLRKIAAATS IARPRADIAY CIHALSRRLS KTRNWIVALK TLVVVHRLLR
101: EGDPTFREEL LNFTQRILQL SNFKDDSSPI AWDCSAWVRT YGQFLEERLE CFRILKYDVE AERLSKQGQG PEKGHSRTRD LDSQDLLEQL PALQQLLYRL
201: VGCRPEGAAN NNYLVQYALA LVLKESFKIY CAINDGIINL VDKFFEMARH EALKALEIYR RAGQQAGNLS DFYENCRGLE LARNFQFPTL REPPQTFLVT
301: MEEYVRDAPR MVPVREPLEF PERLLLTYKP EESEEVPEPD PVEEERPPVE EPVPVQPIPE VVSPPTKTVV ADTGDLLGLN DPSPGVSAIE ESNALALAIV
401: TSDASTSTTG STAWQDKGFD PTGWELALVT APSNTNSSAT DSQLGGGLDK LILDSLYDEG AYRQSQQQQL YGSSAPNPFM TNDPFAMSNH VAAPSSVQMA
501: AMSQQQQQIP TMIHQNPFGP PIQPQHPGAG PGPAAVNPFL DSGFAFPAAN NSQQQANPFG GSLL

Best Arabidopsis Sequence Match ( AT2G01600.1 )
(BLAST)

001: MGTLQSWRKA YGALKDSTKV GLVRVNSEYA DLDVAIVKAT NHVECPPKDR HLRKIFAATS VTRARADVAY CIHALSRRLH KTRNWTVALK TLIVIHRLLR
101: EGDPTFREEL LNFSQRGRIL QLSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRVLKYD TEAERLPKSN PGQDKGYSRT RDLDGEELLE QLPALQQLLY
201: RLIGCRPEGA ANHNHVIQYA LALVLKESFK VYCAINDGII NLIDKFFEMA KHEAITSLEI YKRAGQQARS LSDFYEACKG LELARNFQFP VLREPPQSFL
301: TTMEEYIKEA PRVVDVPAEP LLLTYRPDDG LTTEDTEPSH EEREMLPSDD VVVVSEETEP SPPPPPSANA QNFIDTDDLW GLNTGAPDTS VIEDQNALAL
401: AIVSTDADPP TPHFGQPNNY DPTGWELALV TAPSSDISAS TERKLAGGLD TLTLSSLYDD GAYIASQRPV YGAPAPNPFA SHDPFASSNG TAPPPQQQAV
501: NNPFGAYQQT YQHQPQPTYQ HQSNPPTNNS NPFGDFGEFP VNPVSQQPNT SGYGDFSVNQ HNNPFRSTGL I

Arabidopsis Description

Putative clathrin assembly protein At2g01600 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBH2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.