Factsheet for PGSC0003DMT400075923

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g007860.2.1	Tomato	cytosol, plastid	98.58	98.58
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	77.26	76.72
KRH58627	Soybean	nucleus	77.26	76.45
KRH42533	Soybean	cytosol	76.73	76.06
KRH38239	Soybean	cytosol	71.58	72.74
AT2G01600.1	Thale cress	cytosol, mitochondrion	70.87	69.88
GSMUA_Achr4P13420_001	Banana	cytosol	65.72	69.29
CDY17660	Canola	cytosol	70.16	69.18
Bra024871.1-P	Field mustard	cytosol	70.16	69.18
CDY36239	Canola	cytosol	69.98	69.0
GSMUA_Achr9P21890_001	Banana	cytosol	68.56	68.93
Bra017439.1-P	Field mustard	cytosol	69.45	68.48
CDY04095	Canola	cytosol	69.45	68.48
CDY17459	Canola	cytosol	69.27	68.42
Os05t0549000-01	Rice	plasma membrane	68.38	67.9
Zm00001d038892_P001	Maize	mitochondrion	67.85	67.85
CDY09433	Canola	cytosol, mitochondrion	69.27	67.59
EES19899	Sorghum	cytosol, mitochondrion, plastid	67.5	67.38
CDY48813	Canola	cytosol	69.63	67.24
TraesCS1D01G375800.1	Wheat	cytosol, mitochondrion, plastid	66.25	66.02
Os01t0694900-01	Rice	cytosol	66.43	65.85
TraesCS1A01G369700.1	Wheat	cytosol, mitochondrion, plastid	66.07	65.84
TraesCS1B01G388800.1	Wheat	cytosol, mitochondrion, plastid	65.9	65.78
EES01312	Sorghum	cytosol	65.19	65.19
TraesCS3A01G258900.1	Wheat	cytosol	64.12	64.58
TraesCS3B01G292000.2	Wheat	cytosol, mitochondrion, plastid	64.12	64.23
TraesCS3D01G259000.2	Wheat	cytosol	63.94	63.94
Zm00001d009452_P007	Maize	cytosol, mitochondrion, plastid	61.63	59.62
HORVU1Hr1G078340.3	Barley	plastid	66.07	58.77
Zm00001d043773_P003	Maize	cytosol	63.06	56.62
AT1G14910.1	Thale cress	mitochondrion	66.43	54.05
Bra026647.1-P	Field mustard	cytosol	68.92	53.89
PGSC0003DMT400036570	Potato	cytosol	54.71	53.75
CDY53525	Canola	cytosol, mitochondrion	64.48	52.08
CDY45299	Canola	mitochondrion	63.59	52.03
Bra026179.1-P	Field mustard	cytosol, mitochondrion	63.59	46.74
PGSC0003DMT400017184	Potato	cytosol	33.75	44.08
PGSC0003DMT400020390	Potato	cytosol	38.19	36.2
PGSC0003DMT400025029	Potato	nucleus	16.7	33.1
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	31.26	30.24
PGSC0003DMT400040963	Potato	cytosol	32.33	28.39
PGSC0003DMT400059062	Potato	cytosol	29.66	28.02
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	30.2	27.6
PGSC0003DMT400035762	Potato	cytosol	31.26	27.54
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	19.18	24.55
PGSC0003DMT400075705	Potato	mitochondrion	15.28	21.94
PGSC0003DMT400058608	Potato	mitochondrion	15.28	21.5
PGSC0003DMT400036091	Potato	cytosol	24.69	19.15
PGSC0003DMT400001773	Potato	nucleus	22.56	16.87

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:102584098	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M1CVY5	PFAM:PF07651	EnsemblPlantsGene:PGSC0003DMG400029522
PGSC:PGSC0003DMG400029522	EnsemblPlants:PGSC0003DMT400075923	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	SMART:SM00273
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0002965AAA	RefSeq:XP_006355077.1	SEG:seg	:

Description

Clathrin assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029522]

Coordinates

chr4:+:2500034..2506737

Molecular Weight (calculated)

62469.2 Da

IEP (calculated)

4.940

GRAVY (calculated)

-0.344

Length

563 amino acids

Sequence
(BLAST)

001: MGTLQTWRKA YGALKDHTTV GLAHVNSDFK DVDVAIVKAT NHVECPPKDR HLRKILVYTS AMRPRADVAY CIHALARRLA KTHNWTVALK TLIVIHRTLR
101: EGDPTFREEL LNFQQRGHVL QMSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRVLKYD IEGERLPKPA QGQEKGYSRT RELPSEELLE QLPALQQLLY
201: RLIGCRPEGV ALGNYVIQYA LALVLKESFK IYCAINDGII NLIDKFFDMP RHEAIKALDI YKRAGQQAMN LSDFYGVCKG LELARNFQFP VLREPPQSFL
301: VTMEEYIKEA PRIVSVPIET LDYPERLMLT YKQEDEPSAS EDAQDSANET PPPLPLDDAV VSTTETPSPP MPPPPSSLES DDLLGLNAPT GYASAIEDSN
401: ALALAIVPSG TTPFDSNPAQ PKDFDPTGWE LALVTTPSSD LSAAQERQLA GGMDSLTLNS LYDEGAYRAS QRPVYGAPAP NPFEVADPFA MSTTMAPPPS
501: VQMAAVPQHQ MNPFGPFEPA YPQPQNPMMN PHNPFGDAGF SAFPTNHVAH PQTTNPFGST GLI

Best Arabidopsis Sequence Match ( AT2G01600.1 )
(BLAST)

001: MGTLQSWRKA YGALKDSTKV GLVRVNSEYA DLDVAIVKAT NHVECPPKDR HLRKIFAATS VTRARADVAY CIHALSRRLH KTRNWTVALK TLIVIHRLLR
101: EGDPTFREEL LNFSQRGRIL QLSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRVLKYD TEAERLPKSN PGQDKGYSRT RDLDGEELLE QLPALQQLLY
201: RLIGCRPEGA ANHNHVIQYA LALVLKESFK VYCAINDGII NLIDKFFEMA KHEAITSLEI YKRAGQQARS LSDFYEACKG LELARNFQFP VLREPPQSFL
301: TTMEEYIKEA PRVVDVPAEP LLLTYRPDDG LTTEDTEPSH EEREMLPSDD VVVVSEETEP SPPPPPSANA QNFIDTDDLW GLNTGAPDTS VIEDQNALAL
401: AIVSTDADPP TPHFGQPNNY DPTGWELALV TAPSSDISAS TERKLAGGLD TLTLSSLYDD GAYIASQRPV YGAPAPNPFA SHDPFASSNG TAPPPQQQAV
501: NNPFGAYQQT YQHQPQPTYQ HQSNPPTNNS NPFGDFGEFP VNPVSQQPNT SGYGDFSVNQ HNNPFRSTGL I

Arabidopsis Description

Putative clathrin assembly protein At2g01600 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBH2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.