Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g010530.1.1 | Tomato | cytosol | 94.78 | 94.78 |
| VIT_11s0037g01000.t01 | Wine grape | cytosol | 42.59 | 49.61 |
| GSMUA_Achr4P05920_001 | Banana | cytosol | 41.58 | 45.07 |
| PGSC0003DMT400017184 | Potato | cytosol | 30.81 | 42.46 |
| PGSC0003DMT400036570 | Potato | cytosol | 38.89 | 40.31 |
| PGSC0003DMT400075923 | Potato | cytosol | 36.2 | 38.19 |
| KRH54979 | Soybean | cytosol | 30.81 | 36.17 |
| PGSC0003DMT400025029 | Potato | nucleus | 12.12 | 25.35 |
| PGSC0003DMT400076552 | Potato | cytosol, mitochondrion | 24.41 | 24.91 |
| PGSC0003DMT400040963 | Potato | cytosol | 26.6 | 24.65 |
| PGSC0003DMT400035762 | Potato | cytosol | 25.59 | 23.79 |
| PGSC0003DMT400059062 | Potato | cytosol | 23.4 | 23.32 |
| PGSC0003DMT400079380 | Potato | cytosol, mitochondrion, plastid | 23.06 | 22.24 |
| PGSC0003DMT400075705 | Potato | mitochondrion | 14.14 | 21.43 |
| PGSC0003DMT400092428 | Potato | cytosol, mitochondrion, nucleus | 15.82 | 21.36 |
| PGSC0003DMT400058608 | Potato | mitochondrion | 13.8 | 20.5 |
| PGSC0003DMT400036091 | Potato | cytosol | 21.72 | 17.77 |
| PGSC0003DMT400001773 | Potato | nucleus | 21.72 | 17.13 |
Protein Annotations
| Gene3D:1.20.58.150 | Gene3D:1.25.40.90 | EntrezGene:102581646 | MapMan:35.1 | InterPro:ANTH_dom | InterPro:Clathrin_AP_dom2 |
| InterPro:ENTH | InterPro:ENTH_VHS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005543 |
| GO:GO:0005545 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0008289 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030136 | GO:GO:0030276 | GO:GO:0048268 |
| InterPro:IPR008942 | InterPro:IPR013809 | InterPro:IPR014712 | UniProt:M1ADE5 | PFAM:PF07651 | EnsemblPlantsGene:PGSC0003DMG400007881 |
| PGSC:PGSC0003DMG400007881 | EnsemblPlants:PGSC0003DMT400020390 | PFscan:PS50942 | PANTHER:PTHR22951 | PANTHER:PTHR22951:SF32 | SMART:SM00273 |
| SUPFAM:SSF48464 | SUPFAM:SSF89009 | UniParc:UPI000295B869 | RefSeq:XP_006350141.1 | SEG:seg | : |
Description
Clathrin assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007881]
Coordinates
chr12:-:1875203..1878768
Molecular Weight (calculated)
66753.5 Da
IEP (calculated)
4.688
GRAVY (calculated)
-0.465
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKAFGALK DSTMVGMAKV NSEYKKLDVA ILKATNHVEV MPKEKHVQTF FNAISCNRPR ADVGYCLHTL SKRLTKTHTW QVALKALVVI HRAMREVDIS
101: FLQELINYSA HRGHLLNLTH FKDDSSANAW DYSTWIRSYA LYLEEYLECY CLVKFDFQRE RKRMKELNTP TLIETVPCLQ KLLSRLLDCQ PKGAAQYNFL
201: IQHALSIVAA ESASLYVAIA DGMLNLVDKF FEMQRHDAVR ALEIYRRAGD QAVKLSEFFE ICRNLDFGRG QKYVKIEKPP ESFILAMEEY LTDAPKPLML
301: TWKPDDDDKN TKVIAVPGSK LETDQEQETE VQTKEESNAE TPAPPLIPDL LSFDEPSEDQ SIAPEDNNNA LALVVSTPDE LSNSLSNSDQ SSQPTGWELE
401: LVTASTGASI DQNKLIQGGV LDRSKLDNLY ETALARQNIV NDPYNREVSS NPFEVADNSQ DAFYSSTNSG TNGAQMAAMA HYHDYGVFMQ QQVANMSQSH
501: ESFIGQHEAL MMQQQMAIVS LQQQTMIQEN EAQIQENIGD VPQLLLEGPA ALVNNNDKNP FGNPFSDQDV TTNNNASQDQ SHVSENQNSQ SSLI
101: FLQELINYSA HRGHLLNLTH FKDDSSANAW DYSTWIRSYA LYLEEYLECY CLVKFDFQRE RKRMKELNTP TLIETVPCLQ KLLSRLLDCQ PKGAAQYNFL
201: IQHALSIVAA ESASLYVAIA DGMLNLVDKF FEMQRHDAVR ALEIYRRAGD QAVKLSEFFE ICRNLDFGRG QKYVKIEKPP ESFILAMEEY LTDAPKPLML
301: TWKPDDDDKN TKVIAVPGSK LETDQEQETE VQTKEESNAE TPAPPLIPDL LSFDEPSEDQ SIAPEDNNNA LALVVSTPDE LSNSLSNSDQ SSQPTGWELE
401: LVTASTGASI DQNKLIQGGV LDRSKLDNLY ETALARQNIV NDPYNREVSS NPFEVADNSQ DAFYSSTNSG TNGAQMAAMA HYHDYGVFMQ QQVANMSQSH
501: ESFIGQHEAL MMQQQMAIVS LQQQTMIQEN EAQIQENIGD VPQLLLEGPA ALVNNNDKNP FGNPFSDQDV TTNNNASQDQ SHVSENQNSQ SSLI
001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM
Arabidopsis Description
Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.