Factsheet for PGSC0003DMT400092428

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	73.18	77.78
KRH41749	Soybean	cytosol	31.36	48.76
KRH60451	Soybean	mitochondrion	47.5	47.18
VIT_18s0089g01330.t01	Wine grape	cytosol	20.0	21.89
AT1G33340.1	Thale cress	cytosol, mitochondrion, nucleus	17.73	20.86
Bra028000.1-P	Field mustard	mitochondrion	17.27	20.49
CDY50184	Canola	mitochondrion	17.05	20.38
CDX93766	Canola	mitochondrion	17.05	20.22
PGSC0003DMT400075705	Potato	mitochondrion	17.95	20.15
PGSC0003DMT400058608	Potato	mitochondrion	17.5	19.25
TraesCS4D01G085400.1	Wheat	mitochondrion	17.27	19.24
TraesCS4B01G088300.1	Wheat	mitochondrion	17.27	19.24
PGSC0003DMT400075923	Potato	cytosol	24.55	19.18
HORVU4Hr1G015050.1	Barley	mitochondrion	17.05	18.99
TraesCS4A01G227800.1	Wheat	mitochondrion	17.05	18.99
Zm00001d049002_P001	Maize	mitochondrion	17.27	18.77
PGSC0003DMT400040963	Potato	cytosol	26.14	17.94
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	25.0	17.86
Zm00001d007272_P001	Maize	mitochondrion	15.91	17.72
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	23.18	17.53
PGSC0003DMT400036570	Potato	cytosol	22.5	17.28
Os11t0244600-01	Rice	cytosol	15.45	17.22
PGSC0003DMT400035762	Potato	cytosol	25.0	17.21
EES08262	Sorghum	mitochondrion, plastid	16.59	16.7
PGSC0003DMT400059062	Potato	cytosol	22.27	16.44
PGSC0003DMT400020390	Potato	cytosol	21.36	15.82
PGSC0003DMT400036091	Potato	cytosol	24.77	15.01
PGSC0003DMT400017184	Potato	cytosol	14.55	14.85
PGSC0003DMT400001773	Potato	nucleus	24.55	14.34
PGSC0003DMT400025029	Potato	nucleus	5.68	8.8

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:102605376	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M1DPS6	PFAM:PF07651	EnsemblPlantsGene:PGSC0003DMG400041999
PGSC:PGSC0003DMG400041999	EnsemblPlants:PGSC0003DMT400092428	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF22	SMART:SM00273
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI000296CEA2	RefSeq:XP_006364078.1	SEG:seg	:

Description

Clathrin assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400041999]

Coordinates

chr1:+:409181..410503

Molecular Weight (calculated)

50734.2 Da

IEP (calculated)

6.318

GRAVY (calculated)

-0.390

Length

440 amino acids

Sequence
(BLAST)

001: MHRRIKKVFT SLREHTCVSY AKFATIGGFC DLDHIVVKAT SPDDTPLPDR YVLEILQIFS ICPSSFGPFA LSFSQRFANT RCWRVALKCL HLLHRLLKAL
101: PHTSPFREEL MLARSNGLIS LYPCNFKDRS SSASQDYTYF IWSYARLLDE SLNCCATQGI EIDEYHTTSH ENFIDKMDEV RLILEFLPQL QSLIDRVMDC
201: RPITGQATRN IIVQSVMKHV IRDSFTCYTT FRKEIVEILD HLIQLPYTNC TAAFEIYKKA AKQANELSDF YDWCKSLGLC GMYECPFIDK IPQIQIIALE
301: NFLNGMWQST DDPSSSTSVS PLTSTEDGND YKQKQTMTLL GPSKNVVASV SDTPKMHRNI DDTEESEQHR KQKRQSRFDS EMQPLIQLED DNQDWETLLD
401: ASVSFQSIAS RNNFYLQNNG WEKQVYKPNS GIYPTNSIYH

Best Arabidopsis Sequence Match ( AT2G01600.1 )
(BLAST)

001: MGTLQSWRKA YGALKDSTKV GLVRVNSEYA DLDVAIVKAT NHVECPPKDR HLRKIFAATS VTRARADVAY CIHALSRRLH KTRNWTVALK TLIVIHRLLR
101: EGDPTFREEL LNFSQRGRIL QLSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRVLKYD TEAERLPKSN PGQDKGYSRT RDLDGEELLE QLPALQQLLY
201: RLIGCRPEGA ANHNHVIQYA LALVLKESFK VYCAINDGII NLIDKFFEMA KHEAITSLEI YKRAGQQARS LSDFYEACKG LELARNFQFP VLREPPQSFL
301: TTMEEYIKEA PRVVDVPAEP LLLTYRPDDG LTTEDTEPSH EEREMLPSDD VVVVSEETEP SPPPPPSANA QNFIDTDDLW GLNTGAPDTS VIEDQNALAL
401: AIVSTDADPP TPHFGQPNNY DPTGWELALV TAPSSDISAS TERKLAGGLD TLTLSSLYDD GAYIASQRPV YGAPAPNPFA SHDPFASSNG TAPPPQQQAV
501: NNPFGAYQQT YQHQPQPTYQ HQSNPPTNNS NPFGDFGEFP VNPVSQQPNT SGYGDFSVNQ HNNPFRSTGL I

Arabidopsis Description

Putative clathrin assembly protein At2g01600 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBH2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.