Factsheet for PGSC0003DMT400079380

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008060.1.1	Tomato	cytosol	95.45	95.77
VIT_11s0016g05480.t01	Wine grape	cytosol	69.48	67.61
KRH20132	Soybean	cytosol	63.96	64.38
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	57.14	62.86
PGSC0003DMT400035762	Potato	cytosol	65.1	62.75
PGSC0003DMT400040963	Potato	cytosol	65.26	62.71
Zm00001d030399_P001	Maize	cytosol	34.42	60.57
Zm00001d046121_P001	Maize	cytosol	35.23	59.78
Zm00001d047804_P001	Maize	plasma membrane	61.2	59.46
EER92480	Sorghum	cytosol, mitochondrion, plastid	62.18	59.38
Zm00001d028620_P001	Maize	plasma membrane	61.53	59.31
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	50.0	58.44
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	60.39	58.31
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	60.39	58.31
Os03t0275500-01	Rice	plasma membrane	61.36	58.06
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	60.06	57.28
GSMUA_Achr11P...	Banana	cytosol	40.91	55.26
TraesCS1A01G035100.1	Wheat	cytosol	51.95	51.95
Os05t0112101-01	Rice	plasma membrane	48.86	51.81
TraesCS1D01G036500.1	Wheat	cytosol	51.95	51.78
TraesCS1B01G044800.1	Wheat	cytosol	51.95	51.78
HORVU1Hr1G005290.1	Barley	cytosol	51.46	51.29
Zm00001d035652_P001	Maize	cytosol	46.43	47.91
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	48.38	47.15
EES18894	Sorghum	cytosol	47.56	47.03
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	44.32	46.91
PGSC0003DMT400059062	Potato	cytosol	42.21	43.62
PGSC0003DMT400075923	Potato	cytosol	27.6	30.2
PGSC0003DMT400036570	Potato	cytosol	26.3	28.27
PGSC0003DMT400025029	Potato	nucleus	12.99	28.17
PGSC0003DMT400017184	Potato	cytosol	18.34	26.22
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	17.86	25.0
PGSC0003DMT400075705	Potato	mitochondrion	15.58	24.49
PGSC0003DMT400036091	Potato	cytosol	28.73	24.38
PGSC0003DMT400001773	Potato	nucleus	28.73	23.51
PGSC0003DMT400058608	Potato	mitochondrion	15.1	23.25
PGSC0003DMT400020390	Potato	cytosol	22.24	23.06

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:102582120	MapMan:22.1.4.6	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M1D1R0	PFAM:PF07651	EnsemblPlantsGene:PGSC0003DMG400030899
PGSC:PGSC0003DMG400030899	EnsemblPlants:PGSC0003DMT400079380	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF27	SMART:SM00273
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI000294B5ED	RefSeq:XP_006358291.1	SEG:seg	:

Description

Clathrin assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030899]

Coordinates

chr7:+:4312479..4315292

Molecular Weight (calculated)

67494.0 Da

IEP (calculated)

5.540

GRAVY (calculated)

-0.410

Length

616 amino acids

Sequence
(BLAST)

001: MAMSIRKAIG AVKDQTSISL AKVTSNVAPD LEVLVVKATT HDNDPADEKY IREILHLTSN SRGYVSAFVF AVSKRLSKTH DWVVALKALV LVHRLLTDGD
101: PVLGQEIMYA SRRGMRVLNM SGFRDEAHSN SWDHSGFVRT YAIYLDQKLE FSTYDRKLND GDGYGQYRSD GHGMDRRKRF FNEPDESAGR EEKSGVTPAR
201: EMKPEKVLER LNQLLQLLDR FLACRPTGAA KDSRMVLAAL YSLVKESFKL YADICEVLHN LLDRFAEMEY ADCVKTFDAY VSAAKMIDEL VGTYNWCKDV
301: GIARSSEFPE VQVITDKLLG TLEAFLRERA NRPRSPEINR VESSSAVKEE KTPDMNEIKA LPPPENHTPP PPAPPQPVPQ PRPHAQQVTE DLVNLKDDGV
401: TADGEGNKMA LALFSGPVAK GNGSWEAFPS DGETGQVTSA WQTPAAEIGK ADWELALVET ASNLSKQTAD LAGGFDSLLL NGMYDQGTVR QHVSNTQVTG
501: GSASSVALPG VGKTATPMLA LPAPDGTVQP VGNQDPFAAS LAVPPPSYVQ MAEQERKQHL LMQEQQLWQQ YASNGMQGQM GLSRLAGATP GYYGSGMPPS
601: MPYGMGQPAG YYFTPL

Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)

001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY

Arabidopsis Description

Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.