Factsheet for Zm00001d028620_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047804_P001	Maize	plasma membrane	94.68	95.43
Os03t0275500-01	Rice	plasma membrane	93.9	92.17
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	80.44	91.79
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	91.08	91.22
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	90.77	90.91
Zm00001d030399_P001	Maize	cytosol	49.3	90.0
Zm00001d046121_P001	Maize	cytosol	50.55	88.98
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	89.67	88.7
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	59.15	71.73
CDX76976	Canola	cytosol	63.54	68.47
CDY35361	Canola	cytosol	63.22	68.36
CDY11530	Canola	cytosol	61.03	67.24
CDX68831	Canola	cytosol	61.66	66.67
CDX75232	Canola	cytosol	61.82	66.61
PGSC0003DMT400035762	Potato	cytosol	66.2	66.2
KRH52429	Soybean	endoplasmic reticulum	66.35	66.15
Solyc08g059660.1.1	Tomato	cytosol	65.57	65.88
Bra007800.1-P	Field mustard	cytosol	62.91	65.58
KRH61760	Soybean	mitochondrion	66.51	65.18
PGSC0003DMT400040963	Potato	cytosol	64.63	64.43
VIT_04s0008g05540.t01	Wine grape	cytosol	66.67	64.25
Bra034252.1-P	Field mustard	cytosol	65.26	64.25
Bra011333.1-P	Field mustard	cytosol	62.91	64.11
AT2G25430.1	Thale cress	cytosol	64.95	63.55
Solyc06g011450.1.1	Tomato	cytosol	61.03	63.52
GSMUA_Achr11P...	Banana	cytosol	45.23	63.38
CDX76977	Canola	cytosol	51.64	63.22
VIT_11s0016g05480.t01	Wine grape	cytosol	62.6	63.19
AT4G32285.2	Thale cress	cytosol	62.44	62.83
CDX76760	Canola	cytosol	45.7	62.53
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	59.31	61.53
Solyc07g008060.1.1	Tomato	cytosol	58.22	60.59
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	58.22	58.86
KRH20132	Soybean	cytosol	56.02	58.5
Zm00001d035652_P001	Maize	cytosol	49.45	52.93
KRH05593	Soybean	cytosol	6.73	50.0
Zm00001d010228_P001	Maize	cytosol	41.78	43.41
Zm00001d012220_P001	Maize	cytosol, mitochondrion, nucleus, plastid	34.9	40.18
Zm00001d038892_P001	Maize	mitochondrion	28.17	31.97
Zm00001d037484_P002	Maize	cytosol, mitochondrion	27.23	31.58
Zm00001d036672_P005	Maize	cytosol	27.54	30.61
Zm00001d045154_P002	Maize	mitochondrion	27.07	28.93
Zm00001d047867_P001	Maize	cytosol	14.87	28.88
Zm00001d015430_P001	Maize	cytosol	25.98	28.77
Zm00001d009452_P007	Maize	cytosol, mitochondrion, plastid	25.98	28.52
Zm00001d052008_P003	Maize	cytosol	24.26	28.03
Zm00001d049990_P001	Maize	mitochondrion	16.12	26.55
Zm00001d043773_P003	Maize	cytosol	25.98	26.48
Zm00001d005869_P001	Maize	mitochondrion	15.18	24.37
Zm00001d049002_P001	Maize	mitochondrion	14.55	22.96
Zm00001d007272_P001	Maize	mitochondrion	14.08	22.78
Zm00001d031760_P001	Maize	mitochondrion	16.59	21.54

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100279582	MapMan:22.1.4.6	InterPro:ANTH_dom	UniProt:B7ZYW2
EMBL:BT054504	EMBL:BT069448	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043
GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712
ProteinID:ONL96591.1	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF13	SMART:SM00273
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0001917468	EnsemblPlantsGene:Zm00001d028620	EnsemblPlants:Zm00001d028620_P001	EnsemblPlants:Zm00001d028620_T001
SEG:seg	:	:	:	:	:

Description

Putative clathrin assembly protein

Coordinates

chr1:-:41086669..41088588

Molecular Weight (calculated)

70632.0 Da

IEP (calculated)

5.250

GRAVY (calculated)

-0.616

Length

639 amino acids

Sequence
(BLAST)

001: MSSSTIRKAL GAVKDQTSIG LAKVTSNIAP ELDVLIVKAT SHDDEPAEER HIREILHLTS GSRAHVAAAV AGCSRRLSRT RDYVVALKSL MLVHRLLADG
101: DPSFHRELLH ATRRGTRLLN LSDFRDEAHS GSWDHSAFVR TYALYLDQRL EFFLHERKQG SNAGSSSSTN GPSPRDRDRW GSPDPYGRRS PSYSSPPGYG
201: GYDDYRERNG GNNDDKRPPT PVRDMKPEQV LARMHHLQQL LDRFLACRPT GGAKHSRMVL VALYQIVRES FQLYADICEV LAVLLDRFFD MEYAECVKAF
301: EAYASAAKQI DELCAFYAWC KDTGVARSSE YPEVQRVTDK LLETLEEFMR DRAKRPKSPS PEPEPEPVKE EPEPDMNSIK ALPAPEDYKE PEPEKVEEEV
401: KPEPPLQPQG DLVDLREDTV SADEQGNRLA LALFQGPPAA GGSNGSWEAF PSNGGNEVTS AWQNPAAEPG KADWELALVE TASNLSNQKP AMSGGMDPLL
501: LNGMYDQGVV RQHVGAQVTT GSASSVALPA PGQKTQMLAL PAPDGSMQTV GGDPFAASLA VPPPSYVQMA DLEKKQQLLT QEQIMWQQYQ RDGMQGQSSL
601: NRLDRAPNPA MPYGMPMAYN TNPMPMAYTG NTGYYYPTY

Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)

001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY

Arabidopsis Description

Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.