Factsheet for Solyc08g059660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035762	Potato	cytosol	95.91	95.46
Solyc06g011450.1.1	Tomato	cytosol	80.35	83.22
KRH52429	Soybean	endoplasmic reticulum	76.73	76.13
CDX68831	Canola	cytosol	69.65	74.96
CDX76976	Canola	cytosol	69.65	74.7
CDY35361	Canola	cytosol	69.34	74.62
CDX75232	Canola	cytosol	69.5	74.54
KRH61760	Soybean	mitochondrion	75.79	73.93
VIT_04s0008g05540.t01	Wine grape	cytosol	76.57	73.45
Bra011333.1-P	Field mustard	cytosol	71.23	72.25
CDY11530	Canola	cytosol	65.41	71.72
AT4G32285.2	Thale cress	cytosol	71.23	71.34
AT2G25430.1	Thale cress	cytosol	72.33	70.44
Bra034252.1-P	Field mustard	cytosol	71.54	70.11
Bra007800.1-P	Field mustard	cytosol	67.14	69.66
Zm00001d030399_P001	Maize	cytosol	37.89	68.86
CDX76977	Canola	cytosol	55.82	68.01
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	59.75	67.86
Zm00001d046121_P001	Maize	cytosol	38.21	66.94
CDX76760	Canola	cytosol	48.9	66.6
Zm00001d047804_P001	Maize	plasma membrane	65.41	65.62
Zm00001d028620_P001	Maize	plasma membrane	65.88	65.57
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	54.09	65.28
EER92480	Sorghum	cytosol, mitochondrion, plastid	66.19	65.27
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	65.09	64.89
Os03t0275500-01	Rice	plasma membrane	66.19	64.67
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	64.78	64.58
Solyc07g008060.1.1	Tomato	cytosol	61.95	64.17
KRH05593	Soybean	cytosol	8.65	63.95
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	64.62	63.62
GSMUA_Achr11P...	Banana	cytosol	43.08	60.09
Os05t0112101-01	Rice	plasma membrane	50.94	55.77
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	52.99	53.32
TraesCS1A01G035100.1	Wheat	cytosol	50.63	52.27
TraesCS1D01G036500.1	Wheat	cytosol	50.63	52.1
TraesCS1B01G044800.1	Wheat	cytosol	50.31	51.78
HORVU1Hr1G005290.1	Barley	cytosol	49.53	50.97
EES18894	Sorghum	cytosol	47.33	48.31
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	44.03	48.19
Zm00001d035652_P001	Maize	cytosol	45.13	48.07
Solyc11g044860.1.1	Tomato	cytosol	35.53	45.2
Solyc12g017440.1.1	Tomato	cytosol	16.82	35.79
Solyc07g007820.2.1	Tomato	cytosol	27.2	30.73
Solyc04g007860.2.1	Tomato	cytosol, plastid	27.04	30.55
Solyc02g043810.2.1	Tomato	cytosol	27.2	29.93
Solyc12g006000.1.1	Tomato	cytosol	30.19	26.37
Solyc12g017430.1.1	Tomato	nucleus	8.65	25.94
Solyc04g008350.1.1	Tomato	mitochondrion	15.72	25.45
Solyc07g049380.1.1	Tomato	cytosol	29.4	25.17
Solyc01g005070.2.1	Tomato	mitochondrion	15.57	24.87
Solyc12g010530.1.1	Tomato	cytosol	23.11	24.75
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	15.72	24.15

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.4.6	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	UniProt:K4CKL1	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF13	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:Solyc08g059660.1	EnsemblPlants:Solyc08g059660.1.1
UniParc:UPI000276C87C	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:44456224..44458134

Molecular Weight (calculated)

70147.0 Da

IEP (calculated)

5.168

GRAVY (calculated)

-0.472

Length

636 amino acids

Sequence
(BLAST)

001: MAPSTIRKAI GAVKDQTSIG IAKVGSNMAP ELEVAIVKAT SHDDDPASEK YIREILHLTC CSRGYVTACV SSISKRLGKT RDWIVAIKCL MLIHRLLNDG
101: DPVFHQEIMY ATRRGTRLLN LSDFRDEAHS NSWDHSAFVR TYALYLDQRL EMMVFERKQN GDGGEIERYG SREERWRSPP ASNNRGYDYG EFRDEPGYGM
201: RKSRSSGDVR ESTVQDQKDV TPLRQMEPQR IFGKMSHLQR LLDRFLSCRP TGLAKNERMV LVTLYPMVKE SFQLYADICE VLAILLDKFF DMEYEDCVKA
301: FDAYASASKQ IDELVGFYNW CKDIGIARSS EYPEVQRITS KLLDTLEEFV RDRSKATKSP ERKVEPLPTP SEESPPDMNE IKALPPPEDY TPPPPPKPES
401: PKPAAVVQET GDLVDLREEG VTADDQGNKF ALALFAGPVT NNGSWEAFSS NGGPEVTSAW QNPAAESGKA DWELALVETA SHLSQQKATM GGGLDPLLLN
501: GMYDQGMVRQ HVATAQSSGG SASSVALPGP GKSSTPVLAL PAPDGTVQTV GQDPFAASLS VPPPAYVQMA DLEKKQQLLV QEQILWQQYA RNGMQGQTSL
601: SKISSGGYQA VGMPYGMPPV NGVGVPPAGG YYYTPY

Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)

001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY

Arabidopsis Description

Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.