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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 27224218
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH52429 Soybean endoplasmic reticulum 94.63 96.26
KRH05593 Soybean cytosol 11.2 84.88
CDX76976 Canola cytosol 73.47 80.78
CDY35361 Canola cytosol 72.85 80.37
VIT_04s0008g05540.t01 Wine grape cytosol 79.91 78.58
CDX68831 Canola cytosol 70.25 77.5
CDX75232 Canola cytosol 70.25 77.23
CDY11530 Canola cytosol 68.56 77.07
AT2G25430.1 Thale cress cytosol 76.99 76.88
Bra034252.1-P Field mustard cytosol 76.23 76.58
PGSC0003DMT400035762 Potato cytosol 74.54 76.06
PGSC0003DMT400040963 Potato cytosol 74.69 75.97
Solyc08g059660.1.1 Tomato cytosol 73.93 75.79
AT4G32285.2 Thale cress cytosol 73.47 75.43
Bra011333.1-P Field mustard cytosol 72.39 75.28
Bra007800.1-P Field mustard cytosol 70.4 74.88
CDX76977 Canola cytosol 59.05 73.75
Solyc06g011450.1.1 Tomato cytosol 69.33 73.62
CDX76760 Canola cytosol 51.69 72.16
TraesCS4D01G208100.1 Wheat cytosol, mitochondrion, plastid 60.12 70.0
Zm00001d030399_P001 Maize cytosol 37.42 69.71
Zm00001d046121_P001 Maize cytosol 37.73 67.77
EER92480 Sorghum cytosol, mitochondrion, plastid 66.41 67.13
Zm00001d047804_P001 Maize plasma membrane 65.03 66.88
TraesCS4B01G207200.1 Wheat cytosol, mitochondrion, plastid 65.18 66.61
Os03t0275500-01 Rice plasma membrane 66.41 66.51
Zm00001d028620_P001 Maize plasma membrane 65.18 66.51
GSMUA_Achr9P03950_001 Banana cytosol, mitochondrion, plastid 53.53 66.22
TraesCS4A01G097200.1 Wheat cytosol, mitochondrion, plastid 64.72 66.14
HORVU4Hr1G059660.3 Barley cytosol, mitochondrion, plastid 65.03 65.63
KRH20132 Soybean cytosol 60.43 64.38
GSMUA_Achr11P... Banana cytosol 42.79 61.18
Os05t0112101-01 Rice plasma membrane 49.85 55.94
GSMUA_Achr6P33420_001 Banana cytosol, mitochondrion, plastid 53.83 55.54
TraesCS1A01G035100.1 Wheat cytosol 51.23 54.22
TraesCS1D01G036500.1 Wheat cytosol 50.92 53.72
TraesCS1B01G044800.1 Wheat cytosol 50.77 53.56
HORVU1Hr1G005290.1 Barley cytosol 50.31 53.07
KRH43936 Soybean cytosol, mitochondrion 46.01 50.59
Zm00001d035652_P001 Maize cytosol 46.17 50.42
KRH10492 Soybean cytosol, mitochondrion 45.86 50.17
EES18894 Sorghum cytosol 46.63 48.8
KRH58332 Soybean mitochondrion 43.71 48.72
KRH58627 Soybean nucleus 28.22 32.34
KRH38239 Soybean cytosol 27.45 32.31
KRH42533 Soybean cytosol 27.91 32.04
KRH20163 Soybean cytosol 26.69 31.87
KRH03643 Soybean mitochondrion 26.53 31.57
KRH02791 Soybean cytosol 27.45 31.18
KRH19094 Soybean cytosol 26.99 30.66
KRH12315 Soybean cytosol 27.45 30.03
KRH37330 Soybean cytosol 27.15 29.7
KRH41749 Soybean cytosol 12.27 28.27
KRH60451 Soybean mitochondrion 17.94 26.41
KRH58584 Soybean mitochondrion 15.8 25.81
KRH42490 Soybean cytosol 15.95 25.74
KRG89239 Soybean cytosol, mitochondrion 15.03 25.52
KRH09259 Soybean cytosol, nucleus, peroxisome 16.41 24.88
KRH38757 Soybean cytosol, nucleus, peroxisome 16.41 24.65
KRH17907 Soybean cytosol 27.15 24.25
KRH49763 Soybean mitochondrion 13.96 23.39
KRH54979 Soybean cytosol 17.33 22.33
Protein Annotations
Gene3D:1.20.58.150Gene3D:1.25.40.90EntrezGene:100803282MapMan:22.1.4.6EMBL:ACUP02002188InterPro:ANTH_dom
InterPro:Clathrin_AP_dom2InterPro:ENTHInterPro:ENTH_VHSEnsemblPlantsGene:GLYMA_04G066400GO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0005543GO:GO:0005545GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0008150GO:GO:0008289GO:GO:0009987GO:GO:0016043GO:GO:0030136
GO:GO:0030276GO:GO:0048268UniProt:I1JUC2InterPro:IPR008942InterPro:IPR013809InterPro:IPR014712
ProteinID:KRH61759.1EnsemblPlants:KRH61760ProteinID:KRH61760ProteinID:KRH61760.1PFAM:PF07651PFscan:PS50942
PANTHER:PTHR22951PANTHER:PTHR22951:SF13SMART:SM00273SUPFAM:SSF48464SUPFAM:SSF89009UniParc:UPI000233A7E6
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr4:+:5532814..5535704
Molecular Weight (calculated)
71315.7 Da
IEP (calculated)
5.447
GRAVY (calculated)
-0.441
Length
652 amino acids
Sequence
(BLAST)
001: MAPTTIRKAI GVVKDQTSIG IAKVSSNMAP EMEVAIVKAT SHDDDPASEK YIREILNLMS HSRGYVHACV TAVSKRLGKT RDWIVALKAL MLVHRLMNEG
101: PPLFQEEILF ATRRGTRLLN MSDFRDEAHS SSWDHSAFVR TYAMYLDQRL DLMLFDRKST AASYGGGAGS VGGGGSDDRF GGRDNFQSPP YEYGGGGEFR
201: GEGGYGNGMR KTRSYGDMSE SVGRGEEKRV VSVTPLRDMT PERVFGKMGH LQKLLDRFLA CRPTGLAKNS RMVLIALYPV VKESFQLYAD ICEVLAVLLD
301: KFFDMDYADC VKAFDAYSSA AKQIDELVAF YNWCKDTGVA RSSEYPEVQR ITNKLLETLE EFVRDRAKRP KSPERKEEVP PVEKVEEEPA PDMNEIKALP
401: PPENYIPPPP PEPEPKPQPQ VTEDLVNLRD DAVTADDQGN KLALALFAGA PANNVNGSWE AFPSNGQPEV TSAWQTPAAE PGKADWELAL VETASNLSKQ
501: KATLGGGFDP LLLTGMYDQG MVRQHVSTTQ LSGGSASSVA LPGPGKTTTP VLALPAPDGS VQPVNQDPFA ASLSVPPPSY VQMADMEKKQ HLLVQEQQVW
601: HQYARDGMQG QSSLAKLNGA GYYAGGPMPM MPYGMPPVNG MGPPTGYYHT PY
Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)
001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY
Arabidopsis Description
Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.