CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20163	Soybean	cytosol	96.17	96.52
VIT_11s0016g05900.t01	Wine grape	cytosol	75.18	81.1
Solyc07g007820.2.1	Tomato	cytosol	76.82	74.78
CDY71126	Canola	cytosol, mitochondrion	56.75	73.0
GSMUA_Achr5P23570_001	Banana	cytosol	72.45	72.84
GSMUA_Achr6P03060_001	Banana	cytosol	72.45	72.58
CDY41768	Canola	cytosol, mitochondrion	52.19	71.86
PGSC0003DMT400017184	Potato	cytosol	56.2	71.46
Zm00001d037484_P002	Maize	cytosol, mitochondrion	69.16	68.78
AT5G35200.2	Thale cress	cytosol	68.25	68.75
CDY12401	Canola	cytosol, mitochondrion	67.52	68.52
Bra038937.1-P	Field mustard	mitochondrion	68.61	68.36
KXG19435	Sorghum	cytosol, mitochondrion	70.07	68.09
Os06t0175500-01	Rice	plasma membrane	69.34	66.67
TraesCS7A01G138400.1	Wheat	cytosol	68.07	66.13
HORVU7Hr1G028590.1	Barley	cytosol	68.07	66.02
TraesCS7D01G140200.1	Wheat	cytosol	67.88	65.96
TraesCS7B01G040500.1	Wheat	cytosol	67.7	65.78
Zm00001d045154_P002	Maize	mitochondrion	68.8	63.04
Os02t0803300-01	Rice	cytosol	63.14	60.81
KXG31293	Sorghum	cytosol	60.77	60.55
Zm00001d052008_P003	Maize	cytosol	59.12	58.59
HORVU6Hr1G087330.4	Barley	cytosol	58.03	54.64
TraesCS6A01G370500.1	Wheat	cytosol	56.93	53.61
TraesCS6D01G354100.2	Wheat	cytosol	57.66	53.38
TraesCS6B01G407500.2	Wheat	cytosol	57.48	53.3
KRH58627	Soybean	nucleus	52.92	50.97
KRH42533	Soybean	cytosol	52.37	50.53
KRH12315	Soybean	cytosol	54.2	49.83
KRH37330	Soybean	cytosol	53.65	49.33
KRH38239	Soybean	cytosol	49.45	48.92
KRH19094	Soybean	cytosol	50.55	48.26
KRH02791	Soybean	cytosol	50.37	48.08
KRH54979	Soybean	cytosol	35.95	38.93
KRH05593	Soybean	cytosol	5.47	34.88
KRH58332	Soybean	mitochondrion	31.75	29.74
KRH10492	Soybean	cytosol, mitochondrion	31.93	29.36
KRH43936	Soybean	cytosol, mitochondrion	31.57	29.17
KRH52429	Soybean	endoplasmic reticulum	31.93	27.3
KRH61760	Soybean	mitochondrion	31.57	26.53
KRH20132	Soybean	cytosol	28.83	25.82
KRH41749	Soybean	cytosol	12.96	25.09
KRH60451	Soybean	mitochondrion	19.16	23.7
KRH09259	Soybean	cytosol, nucleus, peroxisome	17.52	22.33
KRH38757	Soybean	cytosol, nucleus, peroxisome	16.97	21.43
KRH58584	Soybean	mitochondrion	15.15	20.8
KRG89239	Soybean	cytosol, mitochondrion	14.42	20.57
KRH42490	Soybean	cytosol	15.15	20.54
KRH49763	Soybean	mitochondrion	14.42	20.31
KRH17907	Soybean	cytosol	22.08	16.58

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100800909	MapMan:35.1	EMBL:ACUP02010355	InterPro:ANTH_dom
InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	EnsemblPlantsGene:GLYMA_17G110800	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136
GO:GO:0030276	GO:GO:0048268	UniProt:I1MU50	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712
EnsemblPlants:KRH03643	ProteinID:KRH03643	ProteinID:KRH03643.1	ProteinID:KRH03644.1	PFAM:PF07651	PFscan:PS50942
PANTHER:PTHR22951	PANTHER:PTHR22951:SF32	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI000233E0B0
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:8683087..8687855

Molecular Weight (calculated)

60828.3 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.395

Length

548 amino acids

Sequence
(BLAST)

001: MSGGTQKSLR KALGALKDTT TVSLAKVNSD YKELDIAIVR ATNHVERPAK EKHIRAIFSA ISATRPRADV AYCIHALARR LSKTHNWAVA LKTLIVIHRA
101: LREVDPTFHE ELINYGRSRS HMLNMAHFKD DSSPNAWDYS AWVRTYALFL EERLECFRVL KYDIEADRPR TKDLDTAELL EQLPALQQLL NRVIGCQPHR
201: AAVNNFVIQL ALSMVASESI KIYQAISDGT VNMVDKFFEM QRHDALKALD IYRRVGHQAE RLSEFYEICR NLDIGRGEKF IKVEQPPSSF LQAMEEYVKD
301: APQGPIVHKD LAIENKEVLA IEYKKTTEVE EERPPSASAS PSPPPPSEPV KVDAPPVQPP PDLLNLEDPV PAAAELEEKN ALALAIVPVA VEQQPSAASN
401: QANGTTGWEL ALVTAPSSNE TATAASKLAG GLDKLTLDSL YDDALRRNNQ NVSYNPWEPA PGGNMMQPTM HDPFFASNTV AAPPSVQMAA MSNQQQTFMF
501: QHQQQQQMMM PPQQQSVNPF GNPYGAAAVH PYGSGMPVQS YNPYTGLI

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.