Factsheet for Os06t0175500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19435	Sorghum	cytosol, mitochondrion	84.91	85.82
Zm00001d037484_P002	Maize	cytosol, mitochondrion	82.63	85.48
HORVU7Hr1G028590.1	Barley	cytosol	82.63	83.36
TraesCS7A01G138400.1	Wheat	cytosol	82.46	83.33
TraesCS7B01G040500.1	Wheat	cytosol	82.28	83.16
TraesCS7D01G140200.1	Wheat	cytosol	82.11	82.98
Zm00001d045154_P002	Maize	mitochondrion	82.98	79.1
GSMUA_Achr6P03060_001	Banana	cytosol	69.82	72.76
GSMUA_Achr5P23570_001	Banana	cytosol	68.42	71.56
KRH20163	Soybean	cytosol	66.84	69.78
VIT_11s0016g05900.t01	Wine grape	cytosol	61.93	69.49
KRH03643	Soybean	mitochondrion	66.67	69.34
Solyc07g007820.2.1	Tomato	cytosol	66.67	67.5
Os02t0803300-01	Rice	cytosol	67.19	67.31
CDY41768	Canola	cytosol, mitochondrion	46.84	67.09
CDY71126	Canola	cytosol, mitochondrion	49.82	66.67
PGSC0003DMT400017184	Potato	cytosol	47.89	63.34
AT5G35200.2	Thale cress	cytosol	59.65	62.5
CDY12401	Canola	cytosol, mitochondrion	59.12	62.41
Bra038937.1-P	Field mustard	mitochondrion	59.65	61.82
Os06t0661400-01	Rice	cytosol	25.96	59.2
Os05t0549000-01	Rice	plasma membrane	49.47	49.74
Os01t0694900-01	Rice	cytosol	48.25	48.42
Os02t0175700-01	Rice	plasma membrane	46.84	45.8
Os06t0699800-00	Rice	cytosol	35.09	45.56
Os03t0275500-01	Rice	plasma membrane	32.11	28.11
Os05t0112101-01	Rice	plasma membrane	27.72	27.19
Os01t0881100-01	Rice	mitochondrion	24.21	26.49
Os05t0426100-00	Rice	cytosol	30.53	26.13
Os08t0467300-01	Rice	mitochondrion	14.91	21.46
Os11t0244600-01	Rice	cytosol	11.75	16.96

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	EntrezGene:4340282	EMBL:AK100481	InterPro:ANTH_dom
ProteinID:BAD44812.1	ProteinID:BAF18864.1	ProteinID:BAS96409.1	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809
InterPro:IPR014712	EnsemblPlantsGene:Os06g0175500	EnsemblPlants:Os06t0175500-01	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF32	UniProt:Q658F5	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI000043A0D0
RefSeq:XP_015644017.1	SEG:seg	:	:	:	:

Description

Epsin-like, N-terminal domain containing protein. (Os06t0175500-01);Similar to predicted protein. (Os06t0175500-02)

Coordinates

chr6:-:3801272..3807766

Molecular Weight (calculated)

62806.5 Da

IEP (calculated)

5.283

GRAVY (calculated)

-0.353

Length

570 amino acids

Sequence
(BLAST)

001: MAGVGTQPTS LRKYLGALKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKEKYIREIF YSISASRPRA DVAYCIHALA RRLSKTRNWA VALKTLIVIH
101: RALREVDPTF REELINYGRS RSHMLNLAYF KDDSSAGAWD FSAWIRTYAL YLEERLECFR VLKYDVETDP PKTRDLETGD LLDHLPALQQ LLFRLLACQP
201: QGASSYNVII QHALSMVALE SVKIYTAISD GTINLVDKFF EMQRSDAVRA LDIYKRATNQ AERLSEFYEV CKTIHIGRGE KFLKIEQPPA SFLVTMEEYV
301: TEAPTVAQKD KVLAIEYKKE AEEEEKPASP PPAPEPEPEQ EPEPEPEPVK EEAPKEEPTD LLGLNEPNPA AAEIEEKNAL ALAIVPIDDV PKVAPAQNGV
401: TGWELALVTT PSSNETAITS SKKLAGGLDL LTLDSLYDDA NRRASQPTSY NPWDVNPGVA GAGAAPMMQQ PMMHDPFYAS SGYAAPHNVQ MTAMAQQQQA
501: FMLQQQMMMA AAAAAAAAPP PQVFHHHQQQ QQHLQANPAN PFGNPFAAAA AAHHPYGAAA AAGNGYTGLI

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.