CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71126	Canola	cytosol, mitochondrion	94.97	88.73
CDY12401	Canola	cytosol, mitochondrion	96.98	71.48
Bra038937.1-P	Field mustard	mitochondrion	95.73	69.27
AT5G35200.2	Thale cress	cytosol	89.45	65.44
VIT_11s0016g05900.t01	Wine grape	cytosol	74.62	58.46
CDY42239	Canola	cytosol	46.98	55.49
KRH20163	Soybean	cytosol	72.61	52.93
KRH03643	Soybean	mitochondrion	71.86	52.19
Solyc07g007820.2.1	Tomato	cytosol	72.11	50.98
GSMUA_Achr5P23570_001	Banana	cytosol	69.35	50.64
GSMUA_Achr6P03060_001	Banana	cytosol	69.35	50.46
Zm00001d037484_P002	Maize	cytosol, mitochondrion	67.34	48.64
KXG19435	Sorghum	cytosol, mitochondrion	67.59	47.7
TraesCS7D01G140200.1	Wheat	cytosol	66.58	46.99
TraesCS7A01G138400.1	Wheat	cytosol	66.58	46.99
HORVU7Hr1G028590.1	Barley	cytosol	66.58	46.9
Os06t0175500-01	Rice	plasma membrane	67.09	46.84
TraesCS7B01G040500.1	Wheat	cytosol	66.33	46.81
Zm00001d045154_P002	Maize	mitochondrion	67.34	44.82
KXG31293	Sorghum	cytosol	61.81	44.73
Os02t0803300-01	Rice	cytosol	63.07	44.11
Zm00001d052008_P003	Maize	cytosol	59.3	42.68
CDY47927	Canola	cytosol	53.02	41.78
PGSC0003DMT400017184	Potato	cytosol	44.97	41.53
TraesCS6A01G370500.1	Wheat	cytosol	60.55	41.41
HORVU6Hr1G087330.4	Barley	cytosol	60.05	41.07
TraesCS6D01G354100.2	Wheat	cytosol	60.3	40.54
TraesCS6B01G407500.2	Wheat	cytosol	60.05	40.44
CDY17660	Canola	cytosol	53.02	36.95
CDY17459	Canola	cytosol	52.51	36.67
CDY36239	Canola	cytosol	52.51	36.6
CDY04095	Canola	cytosol	52.01	36.25
CDY52732	Canola	cytosol	53.27	36.24
CDY38276	Canola	cytosol	53.77	36.15
CDY09433	Canola	cytosol, mitochondrion	52.01	35.88
CDY48813	Canola	cytosol	52.51	35.85
CDX94400	Canola	cytosol	52.26	34.9
CDX89382	Canola	cytosol	52.51	34.78
CDY45299	Canola	mitochondrion	50.75	29.36
CDY53525	Canola	cytosol, mitochondrion	51.26	29.27
CDY15448	Canola	mitochondrion	34.92	24.3
CDY32494	Canola	mitochondrion	33.67	23.43
CDY22070	Canola	mitochondrion	34.42	22.76
CDY18283	Canola	cytosol, nucleus, peroxisome	27.39	22.71
CDY21904	Canola	mitochondrion	33.92	22.54
CDY11530	Canola	cytosol	32.66	22.41
CDY35361	Canola	cytosol	32.91	22.17
CDX76976	Canola	cytosol	32.91	22.09
CDY50184	Canola	mitochondrion	20.1	21.74
CDX75232	Canola	cytosol	31.91	21.42
CDX68831	Canola	cytosol	31.66	21.32
CDX93766	Canola	mitochondrion	19.85	21.29
CDY64692	Canola	mitochondrion	19.6	20.58
CDY03862	Canola	mitochondrion	19.6	20.47
CDY12691	Canola	mitochondrion	18.59	20.33
CDX81471	Canola	mitochondrion	18.59	20.11
CDY57160	Canola	mitochondrion	18.84	19.84
CDY60368	Canola	mitochondrion	18.59	19.58
CDY45281	Canola	cytosol	16.83	19.53
CDY41097	Canola	cytosol	16.83	19.48
CDY01884	Canola	mitochondrion	17.34	19.33
CDX96047	Canola	mitochondrion	17.34	19.11
CDY15531	Canola	cytosol, golgi, nucleus	28.14	18.36
CDY53396	Canola	cytosol	27.39	18.32
CDY18145	Canola	cytosol	20.6	17.6
CDX89917	Canola	cytosol	20.35	17.27
CDX86594	Canola	cytosol, golgi, nucleus	28.14	17.23
CDX76760	Canola	cytosol	18.59	15.85
CDX76977	Canola	cytosol	20.35	15.52
CDX86691	Canola	cytosol, mitochondrion	34.67	13.65
CDY37444	Canola	nucleus	4.77	6.76

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	GO:A0A078HYF4	UniProt:A0A078HYF4	InterPro:ANTH_dom
EnsemblPlants:CDY41768	ProteinID:CDY41768	ProteinID:CDY41768.1	InterPro:Clathrin_AP_dom2	ncoils:Coil	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSBRNA2T00073637001
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF32	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0004EE6E39	SEG:seg

Description

BnaA08g07230DBnaA08g07230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYF4]

Coordinates

chrLK032505:-:251068..253708

Molecular Weight (calculated)

45000.1 Da

IEP (calculated)

5.543

GRAVY (calculated)

-0.247

Length

398 amino acids

Sequence
(BLAST)

001: MSGSQSSLRR YLGAIKDTTT VSLAKVNSGY KELDIAIVKA TNHVERPSKE RYIRAIFMAI SATRPRADVA YCIHALARRL SKTHNWAVAL KTLIVIHRAL
101: REVDQTFHEE VINYSRSRSH MLNMSHFKDD SSPNAWVYST WVRFYALFLE ERLECFRVLK YDVEIDPPRT KELDTPDLLE QLPALQELLF RVLDCQPEGA
201: AVQNHIIQLA LSMVVTESTK IYQALTDGID NLVDKFFEMQ RNDALKALDM YRRAVKQAER LSEFYEVCKS VYVGRGDSFV KIEQPPTSFL QAMEEYVKEA
301: PLAAGAKKEQ VLPECFFLAA PKEILAIEYE KPPEVIEEKP VSPEPPVKAE AEAEKPVEKQ PDLLSMDDPA PGVSELDEKN ALALAIVPVT GKATLNIA

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.