Factsheet for HORVU6Hr1G087330.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G370500.1	Wheat	cytosol	94.16	94.16
TraesCS6B01G407500.2	Wheat	cytosol	93.81	92.39
TraesCS6D01G354100.2	Wheat	cytosol	93.3	91.72
Os02t0803300-01	Rice	cytosol	72.51	74.17
KXG31293	Sorghum	cytosol	67.35	71.27
Zm00001d052008_P003	Maize	cytosol	62.37	65.64
HORVU7Hr1G028590.1	Barley	cytosol	60.82	62.65
GSMUA_Achr6P03060_001	Banana	cytosol	57.04	60.69
VIT_11s0016g05900.t01	Wine grape	cytosol	52.58	60.24
GSMUA_Achr5P23570_001	Banana	cytosol	56.36	60.18
CDY41768	Canola	cytosol, mitochondrion	41.07	60.05
Solyc07g007820.2.1	Tomato	cytosol	57.39	59.33
CDY71126	Canola	cytosol, mitochondrion	42.78	58.45
KRH20163	Soybean	cytosol	54.64	58.24
KRH03643	Soybean	mitochondrion	54.64	58.03
AT5G35200.2	Thale cress	cytosol	52.23	55.88
PGSC0003DMT400017184	Potato	cytosol	41.07	55.45
CDY12401	Canola	cytosol, mitochondrion	50.86	54.81
Bra038937.1-P	Field mustard	mitochondrion	51.37	54.36
HORVU7Hr1G109970.5	Barley	cytosol	41.41	42.13
HORVU7Hr1G097510.7	Barley	mitochondrion	36.77	41.88
HORVU6Hr1G030980.1	Barley	cytosol	41.41	38.93
HORVU1Hr1G078340.3	Barley	plastid	42.1	38.7
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	27.84	25.08
HORVU0Hr1G000720.3	Barley	cytosol	25.95	24.92
HORVU1Hr1G065590.1	Barley	cytosol	25.95	24.92
HORVU1Hr1G005290.1	Barley	cytosol	25.77	24.27
HORVU7Hr1G089710.1	Barley	mitochondrion	5.5	18.08
HORVU4Hr1G015050.1	Barley	mitochondrion	11.51	16.96
HORVU5Hr1G078270.1	Barley	cytosol	12.54	16.55

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:HORVU6Hr1G087330
EnsemblPlants:HORVU6Hr1G087330.4	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0VWE1	PFAM:PF07651
PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF29	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009
UniParc:UPI000296088C	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:563839625..563846331

Molecular Weight (calculated)

64613.4 Da

IEP (calculated)

6.093

GRAVY (calculated)

-0.457

Length

582 amino acids

Sequence
(BLAST)

001: MAGGGTSIRK YVGALKDSTT VSIAKVNSDY KQLDIAIVKA TNHVERPAKE KYIRDIFMHL NSGRARADVA YCIRALARRL SKTRNWAVAL KTLIVIHRAL
101: REVDPSFRDE LVSYGRSSGQ MLHMSYFKDD SSPDAWDHSA WVRNYALFLE ERLESFRVLN YDVELDPLGT RDVDTTGLLA QLPALSQLLF RLISCQPHGS
201: SSYNTIIQHA LAMVATESIR IQTAINDGIL NLVDKFFDMQ RDDAIRALDI YKKALKQAGQ LSGFYETCRT IHIGRGEKLL TIEQPPASFL QAMEDYVRDA
301: PLASKNQAVL AIEYNRKPEE EEASTPPPPP PQVSTSEKEP EPEPVKEVAP RVEQIDLLGM DEPIPDMTAL DQKNALALAI VEPDNGPKAA AGSENVATSW
401: ELALITEPSA TENVATSRNL AGGMDLLTLD SLYDDAHQHA QQNASYNPWE QPAPVASSAP MASMMQQQYQ QQPMHNPLYA SAQQQQAFML QQQQAFALQQ
501: QHQYQQQYQQ MMMMGAPSLH RQASSNPSFH RQASSNPSLH RQASSNPFDR SYTPAAVGGG GYPYAPAMQL HTSNAYTGTG MM

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.